Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41380 * 128.00547 * 2 1 4 4 N 1.30173 * 106.39466 * 179.76122 * 3 2 1 5 5 O 1.20921 * 111.60761 * 0.24442 * 4 3 2 6 6 C 1.34044 * 111.56503 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.77876 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47249 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47089 * 299.98218 * 7 6 5 10 10 C 1.50703 * 109.47030 * 59.98037 * 7 6 5 11 11 H 1.08001 * 119.99709 * 0.02562 * 10 7 6 12 12 C 1.37874 * 119.99949 * 179.97438 * 10 7 6 13 13 N 1.31515 * 119.99993 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99807 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46743 * 60.00593 * 14 12 10 16 16 H 1.48502 * 109.46937 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47433 * 300.00553 * 14 12 10 18 18 H 1.09006 * 109.46916 * 90.02076 * 1 2 3 19 19 H 1.09002 * 109.47079 * 210.02147 * 1 2 3 20 20 H 1.08999 * 109.47098 * 330.02605 * 1 2 3 21 21 H 1.08002 * 126.80618 * 0.03125 * 3 2 1 22 22 H 1.08994 * 109.47182 * 59.99828 * 9 7 6 23 23 H 1.09004 * 109.47133 * 180.02562 * 9 7 6 24 24 H 1.09006 * 109.47127 * 299.99586 * 9 7 6 25 25 H 0.96999 * 119.99694 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3775 1.1140 0.0000 4 7 3.5877 0.6346 0.0052 5 8 3.5877 -0.5746 0.0035 6 6 2.3410 -1.0672 -0.0027 7 6 1.9455 -2.5214 -0.0059 8 1 0.8586 -2.6023 -0.0105 9 6 2.5129 -3.2015 -1.2535 10 6 2.4940 -3.1939 1.2262 11 1 3.0708 -2.6250 1.9403 12 6 2.2584 -4.5351 1.4422 13 7 1.5555 -5.2276 0.5728 14 14 2.9388 -5.3688 2.9691 15 1 2.3890 -4.7084 4.1802 16 1 2.5490 -6.8017 2.9660 17 1 4.4197 -5.2592 2.9747 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5134 21 1 2.0945 2.1563 0.0005 22 1 3.5999 -3.1206 -1.2488 23 1 2.2265 -4.2532 -1.2561 24 1 2.1162 -2.7151 -2.1447 25 1 1.3900 -6.1713 0.7246 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111767.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = 26.432232 kcal Electronic energy + Delta-G solvation = -10812.110160 eV Core-core repulsion = 8792.922955 eV Total energy + Delta-G solvation = -2019.187205 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.63185 -36.88201 -35.31575 -33.58132 -31.29769 -28.55289 -27.29177 -24.46990 -22.90974 -21.26628 -18.75123 -18.07915 -17.56366 -16.47984 -15.44262 -15.19081 -14.58285 -14.00559 -13.77720 -13.49842 -13.29305 -12.89249 -12.83154 -12.36238 -12.24723 -11.95807 -11.73233 -11.24368 -11.08219 -10.53639 -9.75239 -8.16817 -6.31829 0.73314 1.43229 1.44466 1.48405 1.53529 2.41436 2.45089 3.11921 3.57671 3.91957 4.15087 4.50409 4.75993 4.80375 4.89019 5.02179 5.04251 5.07396 5.16999 5.48326 5.50340 5.73163 5.92310 6.18094 6.71012 7.36416 7.43670 8.87622 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.052797 B = 0.013186 C = 0.012549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.210553 B = 2123.034863 C = 2230.720678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.244 4.244 3 C 0.005 3.995 4 N -0.413 5.413 5 O 0.059 5.941 6 C 0.007 3.993 7 C 0.112 3.888 8 H 0.053 0.947 9 C -0.128 4.128 10 C -0.539 4.539 11 H 0.045 0.955 12 C 0.026 3.974 13 N -0.908 5.908 14 Si 0.956 3.044 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.275 1.275 18 H 0.080 0.920 19 H 0.058 0.942 20 H 0.092 0.908 21 H 0.225 0.775 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 6.935 -0.984 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.248 4.248 3 C -0.174 4.174 4 N -0.124 5.124 5 O 0.002 5.998 6 C -0.056 4.056 7 C 0.093 3.907 8 H 0.070 0.930 9 C -0.186 4.186 10 C -0.577 4.577 11 H 0.063 0.937 12 C -0.174 4.174 13 N -0.546 5.546 14 Si 0.781 3.219 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.201 1.201 18 H 0.098 0.902 19 H 0.077 0.923 20 H 0.111 0.889 21 H 0.242 0.758 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.052 0.948 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.581 7.255 -1.016 7.494 hybrid contribution -0.292 -0.684 0.729 1.042 sum -1.873 6.570 -0.287 6.838 Atomic orbital electron populations 1.20080 0.85624 1.03372 1.03044 1.21589 0.99986 0.90872 1.12390 1.25424 0.87596 1.02853 1.01550 1.73784 1.24641 0.91708 1.22259 1.84722 1.30467 1.15766 1.68862 1.25362 0.82817 0.99606 0.97805 1.17490 0.96740 0.80998 0.95459 0.92969 1.21670 0.98619 1.02965 0.95373 1.21166 1.35011 0.95156 1.06386 0.93708 1.25586 0.94970 0.97472 0.99385 1.69936 1.39388 1.08938 1.36323 0.85645 0.78821 0.77623 0.79825 1.19750 1.20087 1.20059 0.90181 0.92330 0.88899 0.75846 0.95347 0.90657 0.94759 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.85 10.15 71.23 0.72 -1.12 15 2 C -0.24 -9.05 6.32 -19.74 -0.12 -9.18 15 3 C 0.00 0.16 12.16 85.71 1.04 1.20 15 4 N -0.41 -17.07 12.07 -59.26 -0.72 -17.78 15 5 O 0.06 2.72 11.20 71.60 0.80 3.52 15 6 C 0.01 0.33 5.93 25.04 0.15 0.48 15 7 C 0.11 5.59 2.70 -12.28 -0.03 5.55 15 8 H 0.05 2.66 7.11 -2.39 -0.02 2.64 15 9 C -0.13 -6.14 8.95 71.98 0.64 -5.50 15 10 C -0.54 -29.57 8.55 25.60 0.22 -29.35 15 11 H 0.04 2.52 7.74 -2.91 -0.02 2.50 15 12 C 0.03 1.41 5.30 84.65 0.45 1.86 15 13 N -0.91 -49.66 11.32 21.45 0.24 -49.42 15 14 Si 0.96 42.75 29.54 68.60 2.03 44.78 15 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 18 H 0.08 2.02 8.14 -2.38 -0.02 2.00 15 19 H 0.06 1.87 7.41 -2.39 -0.02 1.85 15 20 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.23 5.20 8.06 -2.91 -0.02 5.18 15 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.07 3.87 6.07 -2.38 -0.01 3.86 15 24 H 0.03 1.44 8.14 -2.38 -0.02 1.42 15 25 H 0.27 13.88 8.31 -92.71 -0.77 13.11 15 Total: -1.00 -59.57 222.78 6.60 -52.97 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 1.18 Total: 1.99 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 3.07 Total: -36.06 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.47 Total: -67.20 kcal Atomic # 8 Polarization: 2.72 SS G_CDS: 0.80 Total: 3.52 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -59.57 6.60 -52.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111767.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.403 kcal (2) G-P(sol) polarization free energy of solvation -59.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds