Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.09001 * 115.55542 * 34.30666 * 9 7 2 11 11 C 1.53035 * 117.50511 * 248.60292 * 9 7 2 12 12 C 1.52801 * 59.96741 * 252.53404 * 11 9 7 13 13 C 1.53149 * 117.75189 * 107.63461 * 12 11 9 14 14 C 1.53181 * 108.88597 * 199.61595 * 13 12 11 15 15 C 1.52943 * 109.45434 * 303.43540 * 14 13 12 16 16 C 1.52957 * 109.81876 * 62.97981 * 15 14 13 17 17 C 1.53153 * 117.74759 * 252.37177 * 12 11 9 18 18 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 19 19 H 1.09006 * 117.50391 * 0.02562 * 11 9 7 20 20 H 1.08998 * 117.50184 * 145.02231 * 11 9 7 21 21 H 1.08995 * 109.57049 * 319.43534 * 13 12 11 22 22 H 1.08997 * 109.56851 * 79.79616 * 13 12 11 23 23 H 1.08993 * 109.47326 * 183.44159 * 14 13 12 24 24 H 1.08995 * 109.47584 * 63.42887 * 14 13 12 25 25 H 1.08996 * 109.41238 * 302.87744 * 15 14 13 26 26 H 1.08998 * 109.35776 * 183.05181 * 15 14 13 27 27 H 1.09003 * 109.46987 * 177.01704 * 16 15 14 28 28 H 1.08997 * 109.47573 * 57.01233 * 16 15 14 29 29 H 1.09003 * 109.56929 * 280.19471 * 17 12 11 30 30 H 1.09005 * 109.57157 * 40.43660 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.3127 -2.5003 -0.5541 11 6 1.3260 -3.3585 1.2646 12 6 2.0722 -3.7882 0.0023 13 6 3.5983 -3.6597 -0.0026 14 6 4.0913 -3.6604 -1.4528 15 6 3.6070 -4.9300 -2.1548 16 6 2.0784 -4.9434 -2.2059 17 6 1.5208 -4.9840 -0.7798 18 1 -0.4850 0.8401 0.0004 19 1 1.9200 -2.9797 2.0963 20 1 0.4369 -3.9249 1.5416 21 1 3.8876 -2.7266 0.4808 22 1 4.0373 -4.5016 0.5327 23 1 5.1808 -3.6309 -1.4663 24 1 3.6976 -2.7861 -1.9710 25 1 3.9588 -5.8038 -1.6065 26 1 4.0037 -4.9553 -3.1698 27 1 1.7408 -5.8234 -2.7534 28 1 1.7237 -4.0441 -2.7093 29 1 1.8273 -5.9105 -0.2942 30 1 0.4325 -4.9302 -0.8098 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132482.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -8.522797 kcal Electronic energy + Delta-G solvation = -11071.579193 eV Core-core repulsion = 9252.135230 eV Total energy + Delta-G solvation = -1819.443963 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.38084 -34.19789 -32.02056 -30.21446 -26.80412 -25.16580 -22.02451 -20.52022 -20.22806 -17.62404 -16.18121 -14.87449 -14.26485 -13.86297 -13.42459 -12.91430 -12.74454 -12.04386 -11.58424 -11.46469 -10.96745 -10.93539 -10.74354 -10.42942 -10.32156 -10.14272 -9.95373 -9.47786 -9.10118 -8.82974 -8.18950 -8.00445 -6.03149 -4.00715 3.31739 3.36556 3.38905 4.42185 5.00667 5.35703 5.42635 5.44681 5.72094 5.98130 6.07817 6.16287 6.20551 6.22922 6.24009 6.47836 6.56196 6.67517 6.75035 6.81068 6.89819 6.99787 7.02611 7.12429 7.22860 7.50910 7.71978 7.96037 8.52100 9.00319 9.58446 11.07751 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.050179 B = 0.013601 C = 0.012342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.872654 B = 2058.158730 C = 2268.222206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.046 3.954 10 H 0.072 0.928 11 C -0.208 4.208 12 C -0.161 4.161 13 C -0.068 4.068 14 C -0.114 4.114 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.073 4.073 18 H 0.261 0.739 19 H 0.073 0.927 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.819 -6.733 -2.435 8.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.027 3.973 10 H 0.090 0.910 11 C -0.246 4.246 12 C -0.161 4.161 13 C -0.106 4.106 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.110 4.110 18 H 0.071 0.929 19 H 0.092 0.908 20 H 0.079 0.921 21 H 0.089 0.911 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.652 -6.597 -2.444 8.434 hybrid contribution 0.356 0.837 0.157 0.923 sum 5.008 -5.760 -2.286 7.968 Atomic orbital electron populations 1.69962 1.06088 1.26769 1.49815 1.25042 0.94815 0.99187 0.94725 0.86662 0.79622 0.83046 0.78712 1.20118 1.21273 1.20176 1.20711 0.92731 0.89325 1.49947 0.91892 1.19927 0.95782 0.87872 0.93675 0.90992 1.23069 1.00667 1.07760 0.93068 1.21449 0.93391 0.99209 1.02060 1.20933 0.93729 1.00526 0.95377 1.21472 0.98425 0.98090 0.97155 1.21440 0.96092 0.98223 0.99223 1.21470 0.95415 1.00943 0.97250 1.21007 0.98908 0.96617 0.94474 0.92887 0.90848 0.92084 0.91120 0.94344 0.93575 0.91113 0.93035 0.93239 0.93423 0.91648 0.93570 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.13 55.43 0.73 -25.48 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.49 -13.49 8.62 -34.44 -0.30 -13.79 16 8 H 0.06 1.69 5.93 -52.48 -0.31 1.38 16 9 C 0.05 1.18 5.28 -91.84 -0.48 0.70 16 10 H 0.07 2.02 7.90 -51.93 -0.41 1.61 16 11 C -0.21 -4.83 9.69 -26.82 -0.26 -5.09 16 12 C -0.16 -3.44 1.97 -154.53 -0.31 -3.74 16 13 C -0.07 -1.35 5.19 -26.56 -0.14 -1.49 16 14 C -0.11 -2.02 5.93 -26.67 -0.16 -2.18 16 15 C -0.11 -1.77 5.82 -26.78 -0.16 -1.92 16 16 C -0.11 -1.90 5.93 -26.66 -0.16 -2.06 16 17 C -0.07 -1.34 5.67 -26.56 -0.15 -1.50 16 18 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 19 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 20 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 21 H 0.07 1.51 6.10 -51.93 -0.32 1.20 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 241.32 15.07 3.64 3.64 Total: -1.00 -28.28 241.32 -7.68 -35.96 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.82 Total: -1.09 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -2.20 Total: -29.36 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.73 Total: -25.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.28 -7.68 -35.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132482.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.440 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds