Wall clock time and date at job start Mon Mar 30 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99840 * 2 1 4 4 H 1.48510 * 109.46943 * 269.99788 * 3 2 1 5 5 H 1.48492 * 109.47264 * 29.99699 * 3 2 1 6 6 H 1.48495 * 109.47153 * 150.00276 * 3 2 1 7 7 C 1.37873 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00233 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00109 * 180.02562 * 7 2 1 10 10 H 1.09001 * 115.56434 * 325.70395 * 9 7 2 11 11 C 1.53036 * 117.50210 * 111.41164 * 9 7 2 12 12 C 1.52813 * 117.50123 * 179.97438 * 9 7 2 13 13 C 1.53147 * 117.74820 * 144.88807 * 12 9 7 14 14 C 1.53174 * 108.88403 * 160.37660 * 13 12 9 15 15 C 1.52947 * 109.45266 * 56.56550 * 14 13 12 16 16 C 1.52946 * 109.82098 * 297.02019 * 15 14 13 17 17 C 1.53145 * 117.74987 * 0.14783 * 12 9 7 18 18 H 0.96996 * 120.00425 * 0.02562 * 1 2 3 19 19 H 1.08994 * 117.50689 * 0.02562 * 11 9 7 20 20 H 1.09000 * 117.53113 * 214.93944 * 11 9 7 21 21 H 1.09000 * 109.57035 * 40.55592 * 13 12 9 22 22 H 1.09003 * 109.57134 * 280.19869 * 13 12 9 23 23 H 1.08999 * 109.47978 * 296.57013 * 14 13 12 24 24 H 1.09002 * 109.47773 * 176.55831 * 14 13 12 25 25 H 1.08999 * 109.41438 * 57.12566 * 15 14 13 26 26 H 1.09000 * 109.41069 * 176.91559 * 15 14 13 27 27 H 1.09001 * 109.47008 * 182.97658 * 16 15 14 28 28 H 1.08999 * 109.47426 * 302.98331 * 16 15 14 29 29 H 1.09006 * 109.57115 * 319.44044 * 17 12 9 30 30 H 1.08998 * 109.57101 * 79.80350 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.9821 -0.3812 -0.5533 11 6 4.2178 -1.6903 1.2637 12 6 4.2173 -2.5494 0.0000 13 6 5.5303 -2.6696 -0.7791 14 6 6.3001 -3.8911 -0.2677 15 6 5.4233 -5.1374 -0.3991 16 6 4.1822 -4.9938 0.4832 17 6 3.3444 -3.8077 -0.0041 18 1 -0.4850 0.8400 -0.0004 19 1 3.5925 -2.0173 2.0944 20 1 5.1531 -1.2047 1.5419 21 1 6.1285 -1.7712 -0.6272 22 1 5.3151 -2.7919 -1.8406 23 1 6.5648 -3.7419 0.7791 24 1 7.2077 -4.0216 -0.8570 25 1 5.1170 -5.2570 -1.4383 26 1 5.9906 -6.0141 -0.0864 27 1 3.5884 -5.9061 0.4262 28 1 4.4880 -4.8231 1.5154 29 1 2.4933 -3.6639 0.6617 30 1 2.9896 -4.0027 -1.0161 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132483.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:11 Heat of formation + Delta-G solvation = -7.807097 kcal Electronic energy + Delta-G solvation = -10985.783291 eV Core-core repulsion = 9166.370363 eV Total energy + Delta-G solvation = -1819.412928 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.56521 -34.44354 -32.07193 -30.35783 -27.13645 -25.27828 -22.19765 -21.07509 -19.62905 -17.74671 -16.69126 -14.96636 -14.29424 -14.06549 -13.50009 -12.83360 -12.71839 -12.63728 -11.79893 -11.64220 -11.12855 -11.05209 -10.88653 -10.49091 -10.41925 -10.20593 -9.84668 -9.61755 -9.18439 -8.92826 -8.45007 -8.21179 -6.07456 -4.02466 3.30782 3.38978 3.45403 4.45036 4.81858 5.23731 5.26352 5.29919 5.53760 5.79556 5.85420 5.97611 6.00141 6.06243 6.10054 6.36136 6.39434 6.41255 6.55231 6.63482 6.68328 6.78178 6.84903 6.98852 7.08044 7.26468 7.38332 7.79907 8.57817 8.97862 9.56269 11.04403 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.065189 B = 0.012526 C = 0.011230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.416866 B = 2234.819921 C = 2492.740067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.485 4.485 8 H 0.080 0.920 9 C -0.006 4.006 10 H 0.060 0.940 11 C -0.205 4.205 12 C -0.140 4.140 13 C -0.078 4.078 14 C -0.113 4.113 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.068 4.068 18 H 0.264 0.736 19 H 0.080 0.920 20 H 0.063 0.937 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 -5.897 -0.230 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.522 4.522 8 H 0.098 0.902 9 C -0.025 4.025 10 H 0.078 0.922 11 C -0.243 4.243 12 C -0.140 4.140 13 C -0.115 4.115 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.105 4.105 18 H 0.074 0.926 19 H 0.099 0.901 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.813 -5.776 -0.229 11.389 hybrid contribution 0.424 0.945 0.082 1.039 sum 10.237 -4.831 -0.147 11.320 Atomic orbital electron populations 1.69896 1.06351 1.27084 1.50357 1.25017 0.94665 0.99196 0.94179 0.86753 0.80572 0.83381 0.78423 1.20381 1.21528 1.18804 1.20627 0.87455 0.94564 1.49538 0.90197 1.20287 0.95228 0.91760 0.95237 0.92218 1.23199 1.01586 1.06424 0.93069 1.21317 0.96917 0.94046 1.01716 1.21080 0.94773 0.96780 0.98878 1.21494 0.97347 0.95397 1.00865 1.21458 0.96703 0.96993 1.00067 1.21567 0.96346 0.98327 0.99248 1.20945 0.96881 0.91730 1.00931 0.92599 0.90099 0.91883 0.92855 0.92385 0.92385 0.93130 0.92423 0.93189 0.93033 0.92523 0.91134 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.81 27.18 -169.99 -4.62 17.19 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.34 6.92 56.52 0.39 -5.95 16 7 C -0.48 -13.68 9.19 -34.44 -0.32 -14.00 16 8 H 0.08 2.40 6.47 -52.49 -0.34 2.07 16 9 C -0.01 -0.15 4.48 -91.85 -0.41 -0.56 16 10 H 0.06 1.45 6.47 -51.93 -0.34 1.11 16 11 C -0.20 -4.44 9.63 -26.81 -0.26 -4.69 16 12 C -0.14 -2.85 1.97 -154.55 -0.30 -3.16 16 13 C -0.08 -1.34 5.67 -26.57 -0.15 -1.49 16 14 C -0.11 -1.66 5.93 -26.67 -0.16 -1.81 16 15 C -0.11 -1.62 5.82 -26.79 -0.16 -1.78 16 16 C -0.12 -1.85 5.93 -26.67 -0.16 -2.01 16 17 C -0.07 -1.31 4.81 -26.57 -0.13 -1.44 16 18 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 19 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 20 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 21 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.52 6.80 -51.93 -0.35 1.17 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -29.16 238.75 -7.21 -36.37 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.82 Total: -1.49 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -2.14 Total: -28.98 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.62 Total: 17.19 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.16 -7.21 -36.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132483.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.559 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds