Wall clock time and date at job start Mon Mar 30 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99805 * 2 1 4 4 H 1.48499 * 109.47024 * 269.99325 * 3 2 1 5 5 H 1.48496 * 109.47535 * 29.99786 * 3 2 1 6 6 H 1.48507 * 109.47028 * 149.99886 * 3 2 1 7 7 C 1.37878 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99583 * 0.02562 * 7 2 1 10 10 H 1.08994 * 115.56594 * 39.84766 * 9 7 2 11 11 C 1.53070 * 117.51150 * 254.13497 * 9 7 2 12 12 C 1.52997 * 59.98784 * 252.52606 * 11 9 7 13 13 H 1.08997 * 117.50448 * 252.49731 * 12 11 9 14 14 C 1.53006 * 117.49612 * 107.49984 * 12 11 9 15 15 C 1.54271 * 110.48344 * 176.03822 * 14 12 11 16 16 C 1.53874 * 106.63761 * 217.73786 * 15 14 12 17 17 C 1.54258 * 106.60056 * 359.97266 * 16 15 14 18 18 C 1.54896 * 104.19742 * 23.61479 * 17 16 15 19 19 H 0.96998 * 119.99491 * 0.02562 * 1 2 3 20 20 H 1.09000 * 117.49229 * 145.04102 * 11 9 7 21 21 H 1.09004 * 117.51663 * 0.02562 * 11 9 7 22 22 H 1.08999 * 110.54085 * 298.64450 * 14 12 11 23 23 H 1.09005 * 110.03237 * 98.42774 * 15 14 12 24 24 H 1.08997 * 110.03337 * 337.04679 * 15 14 12 25 25 H 1.09002 * 110.03224 * 119.26409 * 16 15 14 26 26 H 1.09011 * 110.02997 * 240.69285 * 16 15 14 27 27 H 1.08996 * 110.48796 * 142.29137 * 17 16 15 28 28 H 1.09004 * 110.49222 * 264.80514 * 17 16 15 29 29 H 1.08988 * 110.75583 * 80.36564 * 18 17 16 30 30 H 1.09003 * 110.75510 * 203.55973 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.3623 -2.5291 -0.6298 11 6 1.2183 -3.2967 1.3066 12 6 2.0676 -3.7864 0.1319 13 1 1.7163 -4.6630 -0.4122 14 6 3.5867 -3.6500 0.2533 15 6 4.2847 -4.2796 -0.9699 16 6 5.5596 -4.9636 -0.4459 17 6 5.5930 -4.7256 1.0778 18 6 4.1120 -4.4745 1.4557 19 1 -0.4849 0.8401 -0.0004 20 1 0.3080 -3.8511 1.5350 21 1 1.7415 -2.8774 2.1660 22 1 3.8696 -2.6024 0.3565 23 1 4.5459 -3.5047 -1.6906 24 1 3.6300 -5.0164 -1.4352 25 1 5.5232 -6.0326 -0.6562 26 1 6.4396 -4.5206 -0.9124 27 1 5.9740 -5.6071 1.5934 28 1 6.2023 -3.8533 1.3145 29 1 3.5707 -5.4164 1.5432 30 1 4.0410 -3.9024 2.3807 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:02 Heat of formation + Delta-G solvation = -4.018243 kcal Electronic energy + Delta-G solvation = -10817.040026 eV Core-core repulsion = 8997.791395 eV Total energy + Delta-G solvation = -1819.248631 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.12529 -35.19350 -32.04905 -28.20829 -27.88507 -25.50725 -21.24523 -20.18024 -19.69222 -18.85295 -16.13139 -15.32860 -14.53914 -14.33667 -13.47220 -13.02821 -12.86069 -12.02847 -11.32243 -11.01523 -10.94655 -10.82791 -10.70042 -10.56499 -10.38670 -10.13233 -10.02279 -9.66984 -9.22936 -8.77944 -8.31461 -8.10761 -6.03186 -4.02005 3.30416 3.37158 3.40177 4.42273 4.99099 5.15349 5.20630 5.23380 5.64692 5.89387 5.90090 6.04881 6.11569 6.15757 6.29195 6.35426 6.47294 6.50195 6.64182 6.69169 6.78993 6.80520 6.99583 7.03150 7.22110 7.49842 7.73381 7.96581 8.50437 8.99163 9.58259 11.08017 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.048828 B = 0.012008 C = 0.010712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.301936 B = 2331.252686 C = 2613.260837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.492 4.492 8 H 0.065 0.935 9 C 0.033 3.967 10 H 0.069 0.931 11 C -0.204 4.204 12 C -0.179 4.179 13 H 0.073 0.927 14 C -0.055 4.055 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.126 4.126 18 C -0.116 4.116 19 H 0.261 0.739 20 H 0.060 0.940 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.779 -6.795 0.562 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.529 4.529 8 H 0.083 0.917 9 C 0.015 3.985 10 H 0.087 0.913 11 C -0.242 4.242 12 C -0.198 4.198 13 H 0.092 0.908 14 C -0.073 4.073 15 C -0.154 4.154 16 C -0.161 4.161 17 C -0.163 4.163 18 C -0.153 4.153 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.093 0.907 22 H 0.108 0.892 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.619 -6.665 0.556 10.138 hybrid contribution 0.319 0.803 0.077 0.867 sum 7.937 -5.863 0.633 9.888 Atomic orbital electron populations 1.69985 1.06087 1.26636 1.49844 1.25036 0.94817 0.99178 0.94740 0.86599 0.79902 0.83383 0.78178 1.20557 1.21186 1.19763 1.20726 0.92690 0.89349 1.50179 0.91699 1.19916 0.96024 0.88808 0.93740 0.91341 1.22943 0.99613 1.07355 0.94335 1.22239 0.92183 1.00564 1.04795 0.90846 1.21533 0.93268 1.00092 0.92430 1.22162 0.95585 0.99206 0.98429 1.22140 0.98237 0.99813 0.95908 1.22359 0.97745 1.00482 0.95747 1.22511 0.94186 0.99863 0.98761 0.92954 0.92187 0.90720 0.89209 0.92227 0.92468 0.92674 0.92645 0.92676 0.92096 0.92249 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.21 55.43 0.73 -25.59 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -13.68 8.67 -34.44 -0.30 -13.98 16 8 H 0.07 1.75 5.64 -52.49 -0.30 1.46 16 9 C 0.03 0.87 5.52 -91.73 -0.51 0.37 16 10 H 0.07 1.93 8.03 -51.93 -0.42 1.51 16 11 C -0.20 -4.77 9.67 -26.70 -0.26 -5.03 16 12 C -0.18 -3.90 5.17 -90.62 -0.47 -4.36 16 13 H 0.07 1.51 7.79 -51.93 -0.40 1.10 16 14 C -0.06 -1.07 2.87 -88.91 -0.25 -1.33 16 15 C -0.12 -1.96 6.37 -25.61 -0.16 -2.12 16 16 C -0.12 -1.74 6.80 -25.62 -0.17 -1.92 16 17 C -0.13 -1.79 6.83 -25.07 -0.17 -1.97 16 18 C -0.12 -1.93 6.07 -24.69 -0.15 -2.08 16 19 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 20 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 21 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 22 H 0.09 1.97 5.40 -51.93 -0.28 1.69 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.94 7.61 -51.93 -0.39 0.54 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.97 8.06 -51.94 -0.42 0.55 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 243.46 15.07 3.67 3.67 Total: -1.00 -28.47 243.46 -7.89 -36.36 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.73 Total: -0.13 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -2.54 Total: -30.69 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.73 Total: -25.59 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.47 -7.89 -36.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.344 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds