Wall clock time and date at job start Mon Mar 30 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99805 * 2 1 4 4 H 1.48499 * 109.47024 * 269.99325 * 3 2 1 5 5 H 1.48496 * 109.47535 * 29.99786 * 3 2 1 6 6 H 1.48507 * 109.47028 * 149.99886 * 3 2 1 7 7 C 1.37878 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99583 * 0.02562 * 7 2 1 10 10 H 1.08994 * 115.56594 * 39.84766 * 9 7 2 11 11 C 1.53070 * 117.51150 * 254.13497 * 9 7 2 12 12 C 1.52997 * 59.98784 * 252.52606 * 11 9 7 13 13 H 1.08997 * 117.50448 * 252.49731 * 12 11 9 14 14 C 1.53006 * 117.49612 * 107.49984 * 12 11 9 15 15 C 1.54271 * 110.48344 * 176.03822 * 14 12 11 16 16 C 1.53874 * 106.63761 * 217.73786 * 15 14 12 17 17 C 1.54258 * 106.60056 * 359.97266 * 16 15 14 18 18 C 1.54896 * 104.19742 * 23.61479 * 17 16 15 19 19 H 0.96998 * 119.99491 * 0.02562 * 1 2 3 20 20 H 1.09000 * 117.49229 * 145.04102 * 11 9 7 21 21 H 1.09004 * 117.51663 * 0.02562 * 11 9 7 22 22 H 1.08999 * 110.54085 * 298.64450 * 14 12 11 23 23 H 1.09005 * 110.03237 * 98.42774 * 15 14 12 24 24 H 1.08997 * 110.03337 * 337.04679 * 15 14 12 25 25 H 1.09002 * 110.03224 * 119.26409 * 16 15 14 26 26 H 1.09011 * 110.02997 * 240.69285 * 16 15 14 27 27 H 1.08996 * 110.48796 * 142.29137 * 17 16 15 28 28 H 1.09004 * 110.49222 * 264.80514 * 17 16 15 29 29 H 1.08988 * 110.75583 * 80.36564 * 18 17 16 30 30 H 1.09003 * 110.75510 * 203.55973 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.3623 -2.5291 -0.6298 11 6 1.2183 -3.2967 1.3066 12 6 2.0676 -3.7864 0.1319 13 1 1.7163 -4.6630 -0.4122 14 6 3.5867 -3.6500 0.2533 15 6 4.2847 -4.2796 -0.9699 16 6 5.5596 -4.9636 -0.4459 17 6 5.5930 -4.7256 1.0778 18 6 4.1120 -4.4745 1.4557 19 1 -0.4849 0.8401 -0.0004 20 1 0.3080 -3.8511 1.5350 21 1 1.7415 -2.8774 2.1660 22 1 3.8696 -2.6024 0.3565 23 1 4.5459 -3.5047 -1.6906 24 1 3.6300 -5.0164 -1.4352 25 1 5.5232 -6.0326 -0.6562 26 1 6.4396 -4.5206 -0.9124 27 1 5.9740 -5.6071 1.5934 28 1 6.2023 -3.8533 1.3145 29 1 3.5707 -5.4164 1.5432 30 1 4.0410 -3.9024 2.3807 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:02 Heat of formation + Delta-G solvation = -18.659788 kcal Electronic energy + Delta-G solvation = -10817.674931 eV Core-core repulsion = 8997.791395 eV Total energy + Delta-G solvation = -1819.883536 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.66444 -36.86806 -34.15361 -29.49648 -29.29298 -27.63539 -22.90064 -22.01675 -20.98154 -20.54836 -18.11663 -16.87162 -16.34434 -15.91904 -15.17350 -14.65449 -14.11250 -13.85531 -13.17770 -12.90101 -12.72850 -12.37236 -12.17850 -11.98389 -11.81100 -11.70347 -11.46322 -11.22694 -11.10803 -10.75375 -10.25051 -10.05551 -8.17546 -6.22180 1.40408 1.40895 1.51902 2.40804 3.04035 3.49447 3.90130 3.92400 4.08637 4.40058 4.56375 4.68587 4.77425 4.79836 4.86000 4.92069 5.00881 5.06700 5.09289 5.16038 5.21559 5.30098 5.47516 5.51199 5.59928 5.65554 5.77549 5.88877 6.39498 6.85286 7.40972 8.94883 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.048828 B = 0.012008 C = 0.010712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.301936 B = 2331.252686 C = 2613.260837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.068 0.932 9 C -0.010 4.010 10 H 0.036 0.964 11 C -0.198 4.198 12 C -0.147 4.147 13 H 0.089 0.911 14 C -0.062 4.062 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.113 4.113 19 H 0.262 0.738 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.750 -7.717 0.770 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.540 4.540 8 H 0.086 0.914 9 C -0.029 4.029 10 H 0.055 0.945 11 C -0.236 4.236 12 C -0.165 4.165 13 H 0.107 0.893 14 C -0.080 4.080 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.158 4.158 18 C -0.150 4.150 19 H 0.071 0.929 20 H 0.089 0.911 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.605 -7.600 0.764 12.272 hybrid contribution -0.339 1.028 0.001 1.083 sum 9.266 -6.572 0.765 11.386 Atomic orbital electron populations 1.70119 1.07722 1.27505 1.51460 1.25911 0.95669 1.02923 0.94589 0.85518 0.78718 0.78777 0.78475 1.19781 1.20884 1.18801 1.21058 0.93018 0.90372 1.49539 0.91415 1.19831 0.96578 0.90706 0.95758 0.94541 1.22884 1.00580 1.06591 0.93530 1.22342 0.93564 0.98266 1.02378 0.89268 1.21529 0.91658 0.99308 0.95514 1.22158 0.97003 0.99176 0.97099 1.22118 0.96980 1.00776 0.95618 1.22348 0.95705 1.01713 0.96027 1.22466 0.96169 0.99399 0.96995 0.92946 0.91130 0.91267 0.92130 0.93087 0.92002 0.90713 0.91322 0.90138 0.92039 0.91434 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.21 21.45 0.28 -56.28 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.50 -28.50 8.67 25.60 0.22 -28.28 16 8 H 0.07 3.72 5.64 -2.91 -0.02 3.70 16 9 C -0.01 -0.55 5.52 -11.51 -0.06 -0.61 16 10 H 0.04 2.15 8.03 -2.39 -0.02 2.13 16 11 C -0.20 -9.26 9.67 30.62 0.30 -8.96 16 12 C -0.15 -6.31 5.17 -10.79 -0.06 -6.37 16 13 H 0.09 3.53 7.79 -2.39 -0.02 3.51 16 14 C -0.06 -2.33 2.87 -9.69 -0.03 -2.35 16 15 C -0.12 -3.68 6.37 31.32 0.20 -3.48 16 16 C -0.12 -2.88 6.80 31.32 0.21 -2.67 16 17 C -0.12 -3.01 6.83 31.67 0.22 -2.79 16 18 C -0.11 -3.50 6.07 31.91 0.19 -3.31 16 19 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 20 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 21 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 22 H 0.06 2.65 5.40 -2.39 -0.01 2.64 16 23 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.06 1.88 7.61 -2.39 -0.02 1.86 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.99 8.06 -2.39 -0.02 1.97 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -61.55 243.46 5.06 -56.49 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.09 Total: 11.33 kcal Atomic # 6 Polarization: -59.61 SS G_CDS: 1.66 Total: -57.96 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.28 Total: -56.28 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.55 5.06 -56.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.833 kcal (2) G-P(sol) polarization free energy of solvation -61.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds