Wall clock time and date at job start Mon Mar 30 2020 01:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09004 * 115.54911 * 325.71767 * 9 7 2 11 11 C 1.52994 * 117.50094 * 111.38996 * 9 7 2 12 12 C 1.52998 * 117.49820 * 180.02562 * 9 7 2 13 13 H 1.08996 * 117.50333 * 359.97438 * 12 9 7 14 14 C 1.53000 * 117.49782 * 145.02518 * 12 9 7 15 15 C 1.54272 * 110.03051 * 297.89753 * 14 12 9 16 16 C 1.54963 * 104.16344 * 217.13821 * 15 14 12 17 17 C 1.54892 * 102.77240 * 37.89074 * 16 15 14 18 18 C 1.53880 * 110.03147 * 180.69041 * 14 12 9 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09001 * 117.50204 * 214.98096 * 11 9 7 21 21 H 1.08998 * 117.49623 * 0.02562 * 11 9 7 22 22 H 1.08998 * 110.02235 * 59.29161 * 14 12 9 23 23 H 1.08998 * 110.48430 * 335.79526 * 15 14 12 24 24 H 1.09004 * 110.48369 * 98.42754 * 15 14 12 25 25 H 1.08997 * 110.72277 * 279.58043 * 16 15 14 26 26 H 1.08998 * 110.76230 * 156.21891 * 16 15 14 27 27 H 1.09000 * 110.48524 * 203.40244 * 17 16 15 28 28 H 1.08995 * 110.48762 * 80.76566 * 17 16 15 29 29 H 1.09006 * 110.02501 * 238.56516 * 18 14 12 30 30 H 1.09000 * 110.03041 * 359.97438 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.3123 -2.5001 0.5538 11 6 1.3258 -3.3582 -1.2643 12 6 2.0729 -3.7895 -0.0005 13 1 3.1588 -3.6946 -0.0010 14 6 1.5146 -4.9828 0.7774 15 6 1.4015 -4.6310 2.2752 16 6 1.7835 -5.9445 3.0032 17 6 2.9223 -6.5082 2.1174 18 6 2.4809 -6.1762 0.6771 19 1 -0.4850 0.8401 0.0004 20 1 0.4366 -3.9246 -1.5414 21 1 1.9204 -2.9796 -2.0957 22 1 0.5366 -5.2602 0.3841 23 1 2.0994 -3.8347 2.5337 24 1 0.3806 -4.3398 2.5226 25 1 0.9377 -6.6315 3.0285 26 1 2.1445 -5.7370 4.0106 27 1 3.0108 -7.5864 2.2503 28 1 3.8662 -6.0155 2.3503 29 1 1.9715 -7.0329 0.2358 30 1 3.3474 -5.9053 0.0738 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134852.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:06 Heat of formation + Delta-G solvation = -22.848669 kcal Electronic energy + Delta-G solvation = -10697.170277 eV Core-core repulsion = 8877.105097 eV Total energy + Delta-G solvation = -1820.065180 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.67950 -36.88705 -34.22470 -29.64066 -29.39251 -27.40587 -22.66871 -22.28402 -21.19951 -20.27727 -18.52066 -16.79882 -16.28070 -16.16310 -14.92965 -14.68901 -14.12774 -13.63136 -13.24458 -13.01337 -12.76947 -12.41290 -12.20581 -11.91091 -11.87656 -11.76374 -11.42352 -11.39624 -11.19413 -11.03679 -10.29942 -10.04816 -8.20714 -6.26350 1.39170 1.41639 1.50016 2.38972 2.98603 3.49571 3.81810 3.87387 4.05107 4.38178 4.56649 4.65160 4.72437 4.76363 4.80786 4.87332 4.97123 5.03488 5.06407 5.15745 5.17167 5.28619 5.49032 5.49837 5.54649 5.62839 5.67925 5.80313 6.35565 6.80339 7.35964 8.90643 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.063600 B = 0.009891 C = 0.009577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.148897 B = 2830.120217 C = 2922.957878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.964 3.036 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.002 3.998 10 H 0.045 0.955 11 C -0.208 4.208 12 C -0.148 4.148 13 H 0.081 0.919 14 C -0.057 4.057 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.114 4.114 19 H 0.264 0.736 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -10.208 3.674 11.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.017 4.017 10 H 0.063 0.937 11 C -0.246 4.246 12 C -0.167 4.167 13 H 0.099 0.901 14 C -0.076 4.076 15 C -0.156 4.156 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.152 4.152 19 H 0.073 0.927 20 H 0.092 0.908 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.039 -10.087 3.671 11.469 hybrid contribution 0.057 1.181 -0.328 1.227 sum 4.096 -8.905 3.343 10.356 Atomic orbital electron populations 1.70089 1.07660 1.27817 1.50766 1.25912 0.95769 1.02993 0.94158 0.85519 0.78337 0.78160 0.79128 1.20525 1.19145 1.19394 1.21004 0.92611 0.91104 1.50556 0.92772 1.19739 0.96323 0.89422 0.96215 0.93693 1.23065 1.01645 1.07152 0.92752 1.22438 0.96683 0.97262 1.00306 0.90106 1.21311 0.98117 0.93371 0.94760 1.22354 1.00339 0.98184 0.94684 1.22506 0.98760 0.95671 0.98604 1.22349 0.98105 1.01243 0.93927 1.22184 0.98484 0.96679 0.97810 0.92689 0.90758 0.91423 0.92523 0.93175 0.93291 0.90685 0.90856 0.89809 0.91984 0.90944 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.27 13.13 21.45 0.28 -55.99 16 2 C 0.01 0.61 5.46 84.66 0.46 1.08 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.52 -29.97 9.20 25.60 0.24 -29.74 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.00 0.08 5.01 -11.54 -0.06 0.02 16 10 H 0.04 2.66 7.90 -2.38 -0.02 2.64 16 11 C -0.21 -9.86 9.89 30.60 0.30 -9.56 16 12 C -0.15 -6.48 4.56 -10.79 -0.05 -6.53 16 13 H 0.08 3.54 7.91 -2.39 -0.02 3.52 16 14 C -0.06 -2.03 3.09 -10.07 -0.03 -2.06 16 15 C -0.12 -4.04 6.11 31.70 0.19 -3.85 16 16 C -0.12 -2.99 6.91 31.91 0.22 -2.76 16 17 C -0.12 -2.81 6.83 31.67 0.22 -2.59 16 18 C -0.11 -3.18 6.45 31.32 0.20 -2.98 16 19 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 20 H 0.07 3.28 8.07 -2.39 -0.02 3.26 16 21 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 22 H 0.06 2.05 7.94 -2.39 -0.02 2.03 16 23 H 0.05 1.92 7.85 -2.39 -0.02 1.90 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.06 1.71 7.53 -2.39 -0.02 1.69 16 Total: -1.00 -62.30 247.80 5.08 -57.22 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.08 Total: 11.14 kcal Atomic # 6 Polarization: -60.67 SS G_CDS: 1.69 Total: -58.97 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -55.99 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -62.30 5.08 -57.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134852.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.368 kcal (2) G-P(sol) polarization free energy of solvation -62.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds