Wall clock time and date at job start Mon Mar 30 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 119.99751 * 2 1 4 4 H 1.48499 * 109.47107 * 269.99836 * 3 2 1 5 5 H 1.48494 * 109.47225 * 30.00109 * 3 2 1 6 6 H 1.48503 * 109.46740 * 149.99999 * 3 2 1 7 7 C 1.40048 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99971 * 196.93095 * 7 2 1 9 9 C 1.41499 * 119.99939 * 16.92863 * 7 2 1 10 10 C 1.41075 * 121.03040 * 203.31913 * 9 7 2 11 11 C 1.37694 * 118.86393 * 180.02562 * 10 9 7 12 12 N 1.32044 * 121.01156 * 359.97438 * 11 10 9 13 13 C 1.32009 * 122.31611 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.49196 * 180.02562 * 13 12 11 15 15 F 1.39903 * 109.47172 * 90.00209 * 14 13 12 16 16 C 1.37734 * 121.01208 * 0.27347 * 13 12 11 17 17 H 0.97005 * 119.99723 * 359.97438 * 1 2 3 18 18 H 1.07998 * 120.56695 * 0.02562 * 10 9 7 19 19 H 1.07997 * 119.49522 * 180.02562 * 11 10 9 20 20 H 1.09000 * 109.47379 * 330.00053 * 14 13 12 21 21 H 1.08997 * 109.47483 * 209.99798 * 14 13 12 22 22 H 1.08007 * 120.56921 * 179.72057 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7001 7 6 2.0076 -1.2129 -0.0005 8 1 3.0524 -1.2333 0.2718 9 6 1.3461 -2.4115 -0.3579 10 6 1.8259 -3.6647 0.0776 11 6 1.1476 -4.8029 -0.2970 12 7 0.0654 -4.7330 -1.0503 13 6 -0.4218 -3.5841 -1.4809 14 6 -1.6619 -3.5784 -2.3372 15 9 -2.7931 -3.4876 -1.5191 16 6 0.1888 -2.3910 -1.1638 17 1 -0.4850 0.8401 0.0004 18 1 2.7101 -3.7301 0.6942 19 1 1.5058 -5.7675 0.0309 20 1 -1.7066 -4.4997 -2.9181 21 1 -1.6329 -2.7238 -3.0131 22 1 -0.2133 -1.4554 -1.5237 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158221.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:31 Heat of formation + Delta-G solvation = -55.938861 kcal Electronic energy + Delta-G solvation = -10289.929618 eV Core-core repulsion = 8143.710229 eV Total energy + Delta-G solvation = -2146.219389 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.54620 -40.20843 -36.08731 -33.07478 -32.28545 -28.03603 -27.37465 -23.70449 -22.32010 -19.35555 -17.62406 -16.91899 -16.81667 -16.52643 -16.11500 -15.70213 -14.94383 -14.42064 -14.08669 -13.24623 -13.02838 -12.87950 -12.70645 -12.03394 -11.92374 -11.65227 -11.29736 -10.06151 -9.96822 -9.61907 -8.75957 -6.62861 0.68920 0.92165 1.38075 1.52676 1.53438 2.15934 2.66227 3.52192 3.61349 4.01333 4.07191 4.38011 4.77292 4.83498 4.94407 4.99346 5.17261 5.35241 5.46187 5.84398 6.10873 6.42111 6.72754 6.73838 7.59886 8.19043 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.048871 B = 0.014343 C = 0.011560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.800206 B = 1951.741766 C = 2421.587830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.036 3.964 3 Si 0.993 3.007 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.484 4.484 8 H 0.087 0.913 9 C 0.091 3.909 10 C -0.285 4.285 11 C 0.098 3.902 12 N -0.577 5.577 13 C 0.054 3.946 14 C 0.129 3.871 15 F -0.228 7.228 16 C -0.215 4.215 17 H 0.294 0.706 18 H 0.118 0.882 19 H 0.160 0.840 20 H 0.102 0.898 21 H 0.101 0.899 22 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 1.007 -2.797 3.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.182 4.182 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.514 4.514 8 H 0.105 0.895 9 C 0.083 3.917 10 C -0.308 4.308 11 C -0.057 4.057 12 N -0.292 5.292 13 C -0.078 4.078 14 C 0.074 3.926 15 F -0.209 7.209 16 C -0.238 4.238 17 H 0.105 0.895 18 H 0.136 0.864 19 H 0.177 0.823 20 H 0.120 0.880 21 H 0.119 0.881 22 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.386 0.360 -3.009 3.055 hybrid contribution 0.658 1.386 0.531 1.623 sum 1.044 1.746 -2.478 3.206 Atomic orbital electron populations 1.69823 1.09348 1.31391 1.33268 1.26957 0.95524 1.05045 0.90631 0.85041 0.78975 0.74971 0.79793 1.18313 1.19128 1.17877 1.19951 0.98434 0.91740 1.41258 0.89474 1.18308 0.91385 0.93770 0.88197 1.22155 1.05641 0.93710 1.09291 1.22449 0.91119 0.98197 0.93888 1.67249 1.15693 1.28428 1.17860 1.21458 0.97443 0.89758 0.99155 1.20745 0.77310 1.05023 0.89543 1.92718 1.53576 1.98029 1.76590 1.22080 1.00689 0.97544 1.03452 0.89452 0.86375 0.82273 0.88029 0.88113 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.36 10.91 21.84 0.24 -41.12 14 2 C 0.04 1.74 5.20 85.29 0.44 2.19 14 3 Si 0.99 36.11 29.59 68.60 2.03 38.14 14 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 14 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 14 7 C -0.48 -25.23 9.12 23.51 0.21 -25.02 14 8 H 0.09 4.31 7.90 -2.91 -0.02 4.28 14 9 C 0.09 4.93 5.61 -21.09 -0.12 4.81 14 10 C -0.29 -13.96 9.91 22.84 0.23 -13.74 14 11 C 0.10 4.48 11.16 84.53 0.94 5.42 14 12 N -0.58 -28.04 10.25 -184.43 -1.89 -29.92 14 13 C 0.05 2.65 6.49 42.41 0.28 2.92 14 14 C 0.13 5.04 7.82 71.24 0.56 5.60 14 15 F -0.23 -9.82 17.34 44.97 0.78 -9.04 14 16 C -0.21 -11.37 8.42 22.84 0.19 -11.18 14 17 H 0.29 13.40 8.29 -92.70 -0.77 12.63 14 18 H 0.12 5.23 8.06 -2.91 -0.02 5.21 14 19 H 0.16 5.94 8.06 -2.91 -0.02 5.92 14 20 H 0.10 3.40 8.14 -2.39 -0.02 3.38 14 21 H 0.10 3.40 8.07 -2.39 -0.02 3.38 14 22 H 0.12 6.37 6.19 -2.91 -0.02 6.35 14 Total: -1.00 -60.11 207.85 5.12 -54.99 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.23 Total: 15.95 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 2.73 Total: -28.99 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -1.65 Total: -71.05 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 0.78 Total: -9.04 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -60.11 5.12 -54.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158221.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.950 kcal (2) G-P(sol) polarization free energy of solvation -60.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds