Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 C 1.29438 * 117.96460 * 119.73218 * 12 2 1 14 14 C 1.50061 * 124.08290 * 180.23159 * 13 12 2 15 15 C 1.53024 * 110.19876 * 343.32901 * 14 13 12 16 16 C 1.53389 * 108.44178 * 49.23917 * 15 14 13 17 17 C 1.50076 * 117.96274 * 300.00108 * 12 2 1 18 18 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 19 19 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 20 20 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 21 21 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 22 22 H 1.08003 * 117.96078 * 0.47470 * 13 12 2 23 23 H 1.09000 * 109.48862 * 223.00255 * 14 13 12 24 24 H 1.09006 * 109.17469 * 103.44817 * 14 13 12 25 25 H 1.09005 * 109.63974 * 289.55768 * 15 14 13 26 26 H 1.09001 * 109.64272 * 168.93009 * 15 14 13 27 27 H 1.08997 * 109.64107 * 172.88075 * 16 15 14 28 28 H 1.09004 * 109.64004 * 52.25292 * 16 15 14 29 29 H 1.09001 * 109.35248 * 283.05378 * 17 12 2 30 30 H 1.08994 * 109.35745 * 42.63992 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2305 13 6 2.7692 -0.0423 -2.0588 14 6 3.3372 -0.6107 -3.3261 15 6 3.2812 -2.1395 -3.2911 16 6 1.8665 -2.5640 -2.8774 17 6 1.6420 -2.1467 -1.4224 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7091 1.1614 3.4844 22 1 2.9923 0.9874 -1.8211 23 1 4.3728 -0.2894 -3.4367 24 1 2.7558 -0.2473 -4.1736 25 1 4.0033 -2.5161 -2.5665 26 1 3.5087 -2.5373 -4.2801 27 1 1.7674 -3.6457 -2.9678 28 1 1.1343 -2.0711 -3.5170 29 1 2.2463 -2.7757 -0.7687 30 1 0.5893 -2.2720 -1.1689 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261206052.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -16.579427 kcal Electronic energy + Delta-G solvation = -10936.695433 eV Core-core repulsion = 9116.902108 eV Total energy + Delta-G solvation = -1819.793325 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.08431 -34.17962 -31.40570 -30.11913 -28.00015 -25.07133 -23.01920 -21.70846 -19.89751 -16.81657 -16.07731 -15.10593 -14.29523 -13.69132 -13.19919 -13.10513 -12.62299 -11.96317 -11.81686 -11.58059 -11.25296 -10.89557 -10.77401 -10.45939 -10.33964 -10.14487 -10.01360 -9.73191 -8.94102 -8.92256 -8.30335 -7.66493 -5.94596 -4.00797 3.30814 3.32430 3.39061 3.43909 4.47598 5.31084 5.35927 5.36854 5.37276 5.94568 6.05172 6.08445 6.14063 6.16610 6.37095 6.40855 6.54585 6.64234 6.85359 6.92496 6.99512 7.16074 7.31378 7.66902 7.72089 7.86041 8.16881 8.22129 8.52177 9.02141 9.63236 11.10976 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.056232 B = 0.012026 C = 0.011353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.817164 B = 2327.675353 C = 2465.708287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 H 0.029 0.971 4 C -0.503 4.503 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.890 3.110 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.064 4.064 13 C -0.218 4.218 14 C -0.076 4.076 15 C -0.118 4.118 16 C -0.120 4.120 17 C -0.079 4.079 18 H 0.082 0.918 19 H 0.006 0.994 20 H 0.027 0.973 21 H 0.259 0.741 22 H 0.094 0.906 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -4.303 -8.092 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.046 3.954 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.064 4.064 13 C -0.236 4.236 14 C -0.113 4.113 15 C -0.156 4.156 16 C -0.157 4.157 17 C -0.116 4.116 18 H 0.101 0.899 19 H 0.025 0.975 20 H 0.046 0.954 21 H 0.069 0.931 22 H 0.112 0.888 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.702 -4.184 -7.945 9.139 hybrid contribution 0.353 -0.339 0.983 1.098 sum 2.054 -4.523 -6.963 8.553 Atomic orbital electron populations 1.21769 0.98246 0.98994 0.99975 1.18027 0.92642 0.95162 0.89598 0.95281 1.21110 1.30694 1.12218 0.90116 0.92676 1.24975 0.95190 0.95062 0.98900 1.69889 1.36969 1.23033 1.23206 0.86621 0.78572 0.80098 0.82875 1.20764 1.21284 1.19948 1.21338 0.94527 0.94631 0.95875 1.21617 1.04597 1.00041 0.97373 1.20269 0.99639 0.94721 0.96705 1.21578 0.97530 0.96270 1.00174 1.21637 0.96807 0.99629 0.97656 1.20347 1.01805 0.94706 0.94713 0.89929 0.97464 0.95376 0.93089 0.88810 0.92508 0.92551 0.92044 0.92881 0.92660 0.92400 0.91088 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.73 37.16 0.32 -2.96 16 2 C 0.06 1.65 2.40 -92.92 -0.22 1.43 16 3 H 0.03 0.82 7.56 -51.93 -0.39 0.43 16 4 C -0.50 -14.01 8.22 -34.44 -0.28 -14.30 16 5 H 0.05 1.52 7.27 -52.49 -0.38 1.14 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -25.90 11.32 55.43 0.63 -25.27 16 8 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 C -0.06 -1.40 4.66 -100.94 -0.47 -1.87 16 13 C -0.22 -4.39 9.40 -35.90 -0.34 -4.73 16 14 C -0.08 -1.23 6.11 -28.18 -0.17 -1.40 16 15 C -0.12 -1.77 6.01 -26.52 -0.16 -1.93 16 16 C -0.12 -1.88 6.01 -26.52 -0.16 -2.04 16 17 C -0.08 -1.53 5.30 -28.18 -0.15 -1.67 16 18 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 19 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 20 H 0.03 0.66 6.74 -51.93 -0.35 0.31 16 21 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 22 H 0.09 1.95 7.56 -52.48 -0.40 1.55 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.89 8.12 -51.93 -0.42 0.46 16 29 H 0.07 1.41 7.74 -51.93 -0.40 1.01 16 30 H 0.07 1.38 6.53 -51.93 -0.34 1.05 16 LS Contribution 239.06 15.07 3.60 3.60 Total: -1.00 -28.47 239.06 -7.18 -35.65 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.67 Total: -2.63 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -1.72 Total: -27.90 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.63 Total: -25.27 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.47 -7.18 -35.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206052.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.074 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds