Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 C 1.29438 * 117.96460 * 119.73218 * 12 2 1 14 14 C 1.50061 * 124.08290 * 180.23159 * 13 12 2 15 15 C 1.53024 * 110.19876 * 343.32901 * 14 13 12 16 16 C 1.53389 * 108.44178 * 49.23917 * 15 14 13 17 17 C 1.50076 * 117.96274 * 300.00108 * 12 2 1 18 18 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 19 19 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 20 20 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 21 21 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 22 22 H 1.08003 * 117.96078 * 0.47470 * 13 12 2 23 23 H 1.09000 * 109.48862 * 223.00255 * 14 13 12 24 24 H 1.09006 * 109.17469 * 103.44817 * 14 13 12 25 25 H 1.09005 * 109.63974 * 289.55768 * 15 14 13 26 26 H 1.09001 * 109.64272 * 168.93009 * 15 14 13 27 27 H 1.08997 * 109.64107 * 172.88075 * 16 15 14 28 28 H 1.09004 * 109.64004 * 52.25292 * 16 15 14 29 29 H 1.09001 * 109.35248 * 283.05378 * 17 12 2 30 30 H 1.08994 * 109.35745 * 42.63992 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2305 13 6 2.7692 -0.0423 -2.0588 14 6 3.3372 -0.6107 -3.3261 15 6 3.2812 -2.1395 -3.2911 16 6 1.8665 -2.5640 -2.8774 17 6 1.6420 -2.1467 -1.4224 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7091 1.1614 3.4844 22 1 2.9923 0.9874 -1.8211 23 1 4.3728 -0.2894 -3.4367 24 1 2.7558 -0.2473 -4.1736 25 1 4.0033 -2.5161 -2.5665 26 1 3.5087 -2.5373 -4.2801 27 1 1.7674 -3.6457 -2.9678 28 1 1.1343 -2.0711 -3.5170 29 1 2.2463 -2.7757 -0.7687 30 1 0.5893 -2.2720 -1.1689 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261206052.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -31.482072 kcal Electronic energy + Delta-G solvation = -10937.341660 eV Core-core repulsion = 9116.902108 eV Total energy + Delta-G solvation = -1820.439552 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.61085 -36.05028 -33.32147 -31.53965 -29.72735 -27.22172 -24.53321 -23.22102 -21.60009 -18.45902 -18.06882 -16.93189 -15.98365 -15.10139 -14.95086 -14.52991 -14.44341 -13.57458 -13.39501 -13.15925 -13.01752 -12.82896 -12.60638 -12.22117 -12.15092 -11.86892 -11.52372 -11.24614 -10.92163 -10.64962 -10.43427 -9.33864 -8.08869 -6.23268 1.39749 1.40019 1.50465 1.68021 2.43706 3.17537 3.98632 4.05001 4.15285 4.54596 4.65096 4.69753 4.77860 4.84171 4.92222 5.04379 5.11074 5.12383 5.23642 5.28698 5.31322 5.47701 5.55148 5.60704 5.80820 5.95654 6.12673 6.31281 6.57319 6.87839 7.44553 8.95493 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.056232 B = 0.012026 C = 0.011353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.817164 B = 2327.675353 C = 2465.708287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.060 3.940 3 H -0.010 1.010 4 C -0.519 4.519 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.266 1.266 12 C -0.091 4.091 13 C -0.206 4.206 14 C -0.076 4.076 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.075 4.075 18 H 0.054 0.946 19 H 0.022 0.978 20 H 0.034 0.966 21 H 0.260 0.740 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -5.750 -9.351 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.042 3.958 3 H 0.008 0.992 4 C -0.557 4.557 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.191 1.191 12 C -0.091 4.091 13 C -0.224 4.224 14 C -0.113 4.113 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.112 4.112 18 H 0.073 0.927 19 H 0.041 0.959 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.418 -5.635 -9.215 11.069 hybrid contribution 0.143 0.198 1.348 1.370 sum 2.561 -5.437 -7.867 9.900 Atomic orbital electron populations 1.21603 0.97871 0.99134 0.99302 1.17962 0.93105 0.93363 0.91409 0.99154 1.21406 1.30738 1.12255 0.91327 0.92983 1.25787 0.95376 0.95791 1.01969 1.70028 1.37883 1.24270 1.23881 0.85598 0.78022 0.79243 0.79079 1.20332 1.20761 1.19059 1.21236 0.96607 0.96251 0.95055 1.21914 1.02759 0.99163 0.98571 1.20351 1.00531 0.95759 0.94635 1.21599 0.96718 0.95114 1.01885 1.21618 0.97575 1.01229 0.94666 1.20302 1.00803 0.92613 0.97464 0.92679 0.95917 0.94685 0.93038 0.90572 0.90878 0.90522 0.92862 0.89400 0.90223 0.91714 0.92303 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.17 8.73 71.98 0.63 -5.54 16 2 C 0.06 3.19 2.40 -12.29 -0.03 3.16 16 3 H -0.01 -0.57 7.56 -2.39 -0.02 -0.59 16 4 C -0.52 -29.51 8.22 25.60 0.21 -29.30 16 5 H 0.05 2.91 7.27 -2.91 -0.02 2.89 16 6 C 0.01 0.50 5.30 84.66 0.45 0.95 16 7 N -0.92 -54.77 11.32 21.45 0.24 -54.53 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C -0.09 -4.02 4.66 -15.09 -0.07 -4.09 16 13 C -0.21 -8.13 9.40 27.04 0.25 -7.88 16 14 C -0.08 -2.21 6.11 29.66 0.18 -2.03 16 15 C -0.12 -3.03 6.01 30.73 0.18 -2.84 16 16 C -0.11 -3.20 6.01 30.73 0.18 -3.01 16 17 C -0.07 -2.82 5.30 29.66 0.16 -2.66 16 18 H 0.05 3.08 6.07 -2.39 -0.01 3.07 16 19 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 20 H 0.03 1.67 6.74 -2.39 -0.02 1.65 16 21 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 22 H 0.08 3.21 7.56 -2.91 -0.02 3.19 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.05 1.49 8.12 -2.38 -0.02 1.47 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.75 8.12 -2.38 -0.02 1.73 16 29 H 0.06 2.31 7.74 -2.39 -0.02 2.30 16 30 H 0.06 2.35 6.53 -2.39 -0.02 2.34 16 Total: -1.00 -61.67 239.06 5.51 -56.16 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.09 Total: 5.04 kcal Atomic # 6 Polarization: -55.39 SS G_CDS: 2.15 Total: -53.24 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.24 Total: -54.53 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -61.67 5.51 -56.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206052.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.680 kcal (2) G-P(sol) polarization free energy of solvation -61.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds