Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47028 * 2 1 4 4 C 1.50706 * 109.46697 * 240.00501 * 2 1 3 5 5 H 1.07997 * 119.99551 * 239.99497 * 4 2 1 6 6 C 1.37874 * 120.00345 * 60.00450 * 4 2 1 7 7 N 1.31510 * 119.99919 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99959 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47309 * 89.99772 * 8 6 4 10 10 H 1.48504 * 109.47206 * 209.99521 * 8 6 4 11 11 H 1.48496 * 109.47447 * 329.99151 * 8 6 4 12 12 C 1.52994 * 109.47370 * 120.00528 * 2 1 3 13 13 H 1.09000 * 109.64172 * 60.41481 * 12 2 1 14 14 C 1.53030 * 109.63961 * 299.99919 * 12 2 1 15 15 C 1.50072 * 110.14486 * 190.87804 * 14 12 2 16 16 C 1.29439 * 124.07650 * 17.13170 * 15 14 12 17 17 C 1.50066 * 124.07706 * 359.54913 * 16 15 14 18 18 C 1.53029 * 110.14599 * 17.11080 * 17 16 15 19 19 H 1.09003 * 109.47293 * 59.99443 * 1 2 3 20 20 H 1.09001 * 109.47640 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47176 * 299.99842 * 1 2 3 22 22 H 0.97002 * 120.00571 * 180.02562 * 7 6 4 23 23 H 1.09001 * 109.35979 * 70.67161 * 14 12 2 24 24 H 1.08997 * 109.35764 * 311.08166 * 14 12 2 25 25 H 1.08000 * 117.96222 * 197.10974 * 15 14 12 26 26 H 1.07999 * 117.96442 * 179.53105 * 16 15 14 27 27 H 1.09000 * 109.35786 * 137.31578 * 17 16 15 28 28 H 1.08994 * 109.36458 * 256.90413 * 17 16 15 29 29 H 1.09000 * 109.64166 * 70.24497 * 18 17 16 30 30 H 1.08995 * 109.64046 * 190.87354 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3446 -2.1613 -4.4125 10 1 2.4871 -0.1399 -5.1121 11 1 3.6307 -1.7563 -3.7122 12 6 2.0400 -0.7213 1.2491 13 1 1.6843 -1.7517 1.2481 14 6 1.5321 -0.0030 2.5013 15 6 2.2313 -0.5313 3.7196 16 6 3.3315 -1.2123 3.6862 17 6 4.0567 -1.5770 2.4240 18 6 3.5737 -0.7002 1.2665 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.7081 1.1612 -3.4843 23 1 0.4590 -0.1663 2.6012 24 1 1.7258 1.0655 2.4084 25 1 1.7890 -0.3306 4.6842 26 1 3.7542 -1.5380 4.6252 27 1 5.1272 -1.4293 2.5668 28 1 3.8669 -2.6239 2.1878 29 1 3.9244 0.3218 1.4100 30 1 3.9564 -1.0934 0.3247 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228665.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = -14.220013 kcal Electronic energy + Delta-G solvation = -10979.432965 eV Core-core repulsion = 9159.741952 eV Total energy + Delta-G solvation = -1819.691013 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.15901 -34.12669 -31.38024 -30.22296 -27.84855 -25.17797 -22.75840 -21.58568 -19.15651 -17.32369 -16.00350 -15.56312 -14.42356 -13.46345 -13.16816 -12.96574 -12.38713 -12.25366 -11.70496 -11.45891 -11.38455 -10.89938 -10.65941 -10.31821 -10.21834 -9.98646 -9.73811 -9.41498 -8.80950 -8.56677 -8.50031 -8.24059 -5.90421 -3.95724 2.72943 3.34130 3.40888 3.43770 4.49421 5.26966 5.38893 5.44317 5.69475 5.89413 5.97372 6.16087 6.20709 6.34249 6.46488 6.66346 6.66896 6.91560 6.97392 7.06405 7.20226 7.25836 7.36657 7.43128 7.51139 7.82188 8.10382 8.25325 8.56268 9.07894 9.68198 11.15479 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.059082 B = 0.012417 C = 0.010712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.807566 B = 2254.371134 C = 2613.228398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 H 0.024 0.976 4 C -0.505 4.505 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.275 1.275 12 C -0.074 4.074 13 H 0.055 0.945 14 C -0.090 4.090 15 C -0.150 4.150 16 C -0.165 4.165 17 C -0.092 4.092 18 C -0.107 4.107 19 H 0.079 0.921 20 H 0.022 0.978 21 H 0.008 0.992 22 H 0.258 0.742 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -2.493 8.122 8.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.029 3.971 3 H 0.042 0.958 4 C -0.544 4.544 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.715 3.285 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.093 4.093 13 H 0.074 0.926 14 C -0.127 4.127 15 C -0.168 4.168 16 C -0.183 4.183 17 C -0.129 4.129 18 C -0.145 4.145 19 H 0.098 0.902 20 H 0.041 0.959 21 H 0.027 0.973 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.725 -2.376 7.986 8.767 hybrid contribution 0.255 -0.471 -0.751 0.923 sum 2.980 -2.847 7.235 8.327 Atomic orbital electron populations 1.21831 0.99090 0.98709 0.99907 1.18689 0.92252 0.95531 0.90604 0.95808 1.21230 1.30511 1.12025 0.90609 0.92640 1.24967 0.95307 0.95037 0.98871 1.69893 1.37145 1.23099 1.23033 0.86679 0.79234 0.79427 0.83144 1.20865 1.21387 1.19992 1.21255 0.94140 0.99145 0.94712 0.92635 1.20631 0.99081 0.99925 0.93028 1.22212 0.96755 0.99081 0.98742 1.22021 0.97357 1.00759 0.98131 1.20508 0.98410 1.00138 0.93819 1.21603 0.96878 0.98709 0.97277 0.90231 0.95872 0.97289 0.93226 0.91650 0.91440 0.89138 0.89189 0.92288 0.91630 0.92953 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.63 37.16 0.32 -3.06 16 2 C 0.05 1.19 1.87 -91.77 -0.17 1.02 16 3 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.51 -13.84 7.75 -34.44 -0.27 -14.11 16 5 H 0.06 1.50 6.83 -52.49 -0.36 1.14 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.88 11.32 55.43 0.63 -25.25 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.07 -1.55 1.77 -90.40 -0.16 -1.71 16 13 H 0.06 1.21 8.13 -51.93 -0.42 0.78 16 14 C -0.09 -1.64 4.75 -28.17 -0.13 -1.78 16 15 C -0.15 -2.40 9.80 -35.90 -0.35 -2.75 16 16 C -0.16 -2.54 9.80 -35.90 -0.35 -2.90 16 17 C -0.09 -1.48 6.12 -28.17 -0.17 -1.66 16 18 C -0.11 -2.08 5.17 -26.51 -0.14 -2.22 16 19 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 20 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.01 0.18 6.70 -51.93 -0.35 -0.17 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.06 1.17 7.05 -51.93 -0.37 0.80 16 24 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 25 H 0.09 1.26 8.06 -52.49 -0.42 0.83 16 26 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 30 H 0.08 1.58 6.54 -51.93 -0.34 1.24 16 LS Contribution 237.69 15.07 3.58 3.58 Total: -1.00 -28.07 237.69 -6.99 -35.06 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.66 Total: -2.24 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -1.52 Total: -27.62 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.63 Total: -25.25 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.07 -6.99 -35.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228665.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.845 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds