Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47502 * 2 1 4 4 C 1.50700 * 109.47084 * 119.99887 * 2 1 3 5 5 H 1.08002 * 120.00228 * 119.99698 * 4 2 1 6 6 C 1.37883 * 119.99774 * 300.00401 * 4 2 1 7 7 N 1.31509 * 119.99812 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99917 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47358 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47262 * 119.99494 * 8 6 4 11 11 H 1.48501 * 109.47375 * 239.99486 * 8 6 4 12 12 C 1.53003 * 109.47261 * 239.99753 * 2 1 3 13 13 H 1.09003 * 109.81025 * 299.47078 * 12 2 1 14 14 C 1.53015 * 109.64241 * 60.00033 * 12 2 1 15 15 C 1.50065 * 110.14833 * 169.12188 * 14 12 2 16 16 C 1.29444 * 124.07585 * 342.87120 * 15 14 12 17 17 C 1.50076 * 124.07409 * 0.46662 * 16 15 14 18 18 C 1.53019 * 110.14618 * 342.87111 * 17 16 15 19 19 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.46915 * 300.00169 * 1 2 3 21 21 H 1.09002 * 109.46541 * 60.00646 * 1 2 3 22 22 H 0.97002 * 119.99682 * 180.02562 * 7 6 4 23 23 H 1.08999 * 109.35672 * 48.91500 * 14 12 2 24 24 H 1.09001 * 109.24749 * 289.25943 * 14 12 2 25 25 H 1.08004 * 117.96434 * 162.85069 * 15 14 12 26 26 H 1.08002 * 117.96460 * 180.19240 * 16 15 14 27 27 H 1.08998 * 109.35107 * 103.07595 * 17 16 15 28 28 H 1.09002 * 109.35548 * 222.66187 * 17 16 15 29 29 H 1.09006 * 109.64636 * 289.75252 * 18 17 16 30 30 H 1.09001 * 109.81634 * 169.22154 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.1454 -2.2876 3.6039 10 1 3.1465 -0.1873 4.8165 11 1 1.1659 -1.5865 4.8161 12 6 2.0401 -0.7213 -1.2492 13 1 1.6876 -1.7528 -1.2500 14 6 1.5322 -0.0031 -2.5013 15 6 2.2313 -0.5313 -3.7195 16 6 3.3316 -1.2123 -3.6862 17 6 4.0566 -1.5774 -2.4240 18 6 3.5738 -0.7007 -1.2665 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 0.7094 1.1618 3.4843 23 1 1.7259 1.0655 -2.4084 24 1 0.4594 -0.1686 -2.6001 25 1 1.7887 -0.3310 -4.6842 26 1 3.7519 -1.5419 -4.6250 27 1 3.8663 -2.6244 -2.1880 28 1 5.1272 -1.4301 -2.5667 29 1 3.9248 0.3213 -1.4096 30 1 3.9561 -1.0906 -0.3231 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228667.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = -28.752741 kcal Electronic energy + Delta-G solvation = -10980.133545 eV Core-core repulsion = 9159.812346 eV Total energy + Delta-G solvation = -1820.321200 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.68430 -35.97581 -33.29460 -31.61941 -29.56671 -27.24272 -24.38646 -23.14951 -20.98557 -18.88256 -17.95407 -17.03856 -16.31098 -14.95905 -14.83702 -14.61878 -14.15294 -13.79751 -13.42888 -13.05933 -12.98567 -12.84906 -12.52536 -12.12221 -12.06874 -11.86706 -11.37644 -11.20156 -10.56382 -10.50360 -10.34763 -9.75400 -8.04483 -6.16618 1.39946 1.42035 1.52239 1.53012 2.45342 3.22750 3.99559 4.09845 4.16903 4.57037 4.58441 4.71884 4.78392 4.85057 4.93916 5.07122 5.11038 5.18191 5.20098 5.41392 5.44390 5.55357 5.64066 5.69710 5.89909 6.06349 6.17623 6.22745 6.45953 6.95358 7.50685 9.00528 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.059086 B = 0.012417 C = 0.010713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.775394 B = 2254.431818 C = 2613.139322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.044 3.956 3 H -0.008 1.008 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.921 5.921 8 Si 0.950 3.050 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.283 1.283 12 C -0.070 4.070 13 H 0.047 0.953 14 C -0.087 4.087 15 C -0.161 4.161 16 C -0.160 4.160 17 C -0.089 4.089 18 C -0.107 4.107 19 H 0.023 0.977 20 H 0.050 0.950 21 H 0.032 0.968 22 H 0.258 0.742 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -3.542 -9.393 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.026 3.974 3 H 0.010 0.990 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.562 5.562 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.209 1.209 12 C -0.088 4.088 13 H 0.066 0.934 14 C -0.124 4.124 15 C -0.179 4.179 16 C -0.178 4.178 17 C -0.126 4.126 18 C -0.144 4.144 19 H 0.042 0.958 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.141 0.859 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.482 -3.439 -9.269 10.482 hybrid contribution 0.026 -0.111 1.157 1.162 sum 3.508 -3.550 -8.112 9.525 Atomic orbital electron populations 1.21685 0.98805 0.98525 0.99632 1.18677 0.92548 0.93985 0.92200 0.99015 1.21604 1.30241 1.12024 0.91780 0.92746 1.25750 0.95600 0.95828 1.01900 1.70042 1.38224 1.24403 1.23529 0.85629 0.78118 0.78802 0.79865 1.19035 1.20848 1.20869 1.21113 0.95319 0.98234 0.94183 0.93432 1.20528 0.99581 0.99256 0.92999 1.22239 0.97198 0.99906 0.98584 1.22247 0.96802 0.99885 0.98855 1.20495 0.99873 0.99475 0.92790 1.21534 0.95749 0.99101 0.98057 0.95827 0.93127 0.94886 0.93296 0.92250 0.91403 0.86369 0.85912 0.91112 0.90040 0.93654 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 8.63 71.98 0.62 -5.78 16 2 C 0.04 2.26 1.87 -11.54 -0.02 2.24 16 3 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 4 C -0.52 -28.82 7.75 25.60 0.20 -28.62 16 5 H 0.05 2.97 6.83 -2.91 -0.02 2.95 16 6 C 0.01 0.38 5.30 84.66 0.45 0.83 16 7 N -0.92 -54.54 11.32 21.45 0.24 -54.30 16 8 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 C -0.07 -2.92 1.78 -10.66 -0.02 -2.94 16 13 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 14 C -0.09 -3.07 4.75 29.65 0.14 -2.93 16 15 C -0.16 -4.68 9.80 27.04 0.27 -4.41 16 16 C -0.16 -4.35 9.80 27.04 0.27 -4.09 16 17 C -0.09 -2.66 6.12 29.66 0.18 -2.48 16 18 C -0.11 -4.10 5.17 30.73 0.16 -3.94 16 19 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16 21 H 0.03 1.43 6.70 -2.39 -0.02 1.41 16 22 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 23 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 24 H 0.07 2.33 7.05 -2.39 -0.02 2.31 16 25 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 26 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.76 8.12 -2.38 -0.02 1.74 16 30 H 0.05 2.27 6.53 -2.39 -0.02 2.25 16 Total: -1.00 -60.01 237.68 5.59 -54.42 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.08 Total: 5.56 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 2.24 Total: -52.11 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.24 Total: -54.30 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.01 5.59 -54.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228667.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.664 kcal (2) G-P(sol) polarization free energy of solvation -60.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds