Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47846 * 2 1 4 4 C 1.50707 * 109.46702 * 240.00047 * 2 1 3 5 5 H 1.08003 * 120.00197 * 245.48552 * 4 2 1 6 6 C 1.37875 * 120.00005 * 65.49338 * 4 2 1 7 7 N 1.31520 * 119.99627 * 9.40277 * 6 4 2 8 8 Si 1.86797 * 120.00262 * 189.40121 * 6 4 2 9 9 H 1.48501 * 109.46849 * 84.99181 * 8 6 4 10 10 H 1.48495 * 109.47355 * 204.99565 * 8 6 4 11 11 H 1.48503 * 109.46936 * 324.99883 * 8 6 4 12 12 C 1.53008 * 109.47014 * 120.00704 * 2 1 3 13 13 H 1.09002 * 109.80927 * 60.52381 * 12 2 1 14 14 C 1.53016 * 109.64018 * 181.05025 * 12 2 1 15 15 C 1.50072 * 110.14661 * 169.11956 * 14 12 2 16 16 C 1.29447 * 124.07189 * 342.86845 * 15 14 12 17 17 C 1.50541 * 124.15932 * 0.41254 * 16 15 14 18 18 C 1.53018 * 109.89275 * 342.99728 * 17 16 15 19 19 H 1.09005 * 109.46871 * 305.29835 * 1 2 3 20 20 H 1.08997 * 109.47037 * 65.28923 * 1 2 3 21 21 H 1.08993 * 109.47565 * 185.29140 * 1 2 3 22 22 H 0.97000 * 119.99714 * 180.02562 * 7 6 4 23 23 H 1.08995 * 109.36240 * 289.32391 * 14 12 2 24 24 H 1.09002 * 109.36351 * 49.05352 * 14 12 2 25 25 H 1.07997 * 117.96605 * 162.84738 * 15 14 12 26 26 H 1.08004 * 117.95845 * 180.49134 * 16 15 14 27 27 H 1.09000 * 109.62922 * 222.78168 * 17 16 15 28 28 H 1.09000 * 109.34916 * 103.04424 * 17 16 15 29 29 H 1.08997 * 109.64519 * 289.58298 * 18 17 16 30 30 H 1.09004 * 109.64782 * 169.16052 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.5781 -1.6374 -1.1340 6 6 1.7950 -0.1770 -2.4796 7 7 1.2974 1.0351 -2.5933 8 14 2.1803 -1.1759 -4.0104 9 1 1.0304 -2.0609 -4.3263 10 1 2.4266 -0.2580 -5.1514 11 1 3.3901 -2.0029 -3.7702 12 6 2.0400 -0.7214 1.2492 13 1 1.6873 -1.7528 1.2500 14 6 3.5699 -0.7009 1.2664 15 6 4.0781 -1.1638 2.6005 16 6 3.3545 -1.2204 3.6723 17 6 1.8994 -0.8387 3.7310 18 6 1.5309 -0.0014 2.5044 19 1 -0.3633 0.5939 0.8388 20 1 -0.3633 0.4296 -0.9335 21 1 -0.3634 -1.0232 0.0948 22 1 1.1302 1.4102 -3.4720 23 1 3.9490 -1.3612 0.4865 24 1 3.9198 0.3147 1.0815 25 1 5.1116 -1.4690 2.6706 26 1 3.8242 -1.5618 4.5829 27 1 1.7090 -0.2592 4.6344 28 1 1.2895 -1.7419 3.7484 29 1 1.9973 0.9810 2.5777 30 1 0.4480 0.1103 2.4488 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -15.243216 kcal Electronic energy + Delta-G solvation = -10966.826899 eV Core-core repulsion = 9147.091517 eV Total energy + Delta-G solvation = -1819.735383 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.14299 -34.08967 -31.41945 -30.15786 -28.01848 -25.09281 -22.44993 -22.03882 -19.09243 -17.23673 -16.09588 -15.53129 -14.40127 -13.52381 -13.14519 -12.73219 -12.56807 -12.28751 -11.69844 -11.60428 -11.38269 -10.85717 -10.68472 -10.34207 -10.13549 -10.10306 -9.90518 -9.40330 -8.76035 -8.61163 -8.45147 -8.24251 -5.94232 -3.94847 2.77749 3.34735 3.41234 3.43695 4.49946 5.27744 5.37934 5.42556 5.63607 5.88643 6.01109 6.07452 6.24713 6.34828 6.47601 6.63598 6.69608 6.87470 6.91431 6.99845 7.15987 7.18992 7.31657 7.46492 7.49924 7.80749 8.08235 8.11105 8.54928 9.09078 9.67900 11.14963 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.060348 B = 0.012130 C = 0.010778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.867014 B = 2307.721230 C = 2597.153103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.046 3.954 3 H 0.031 0.969 4 C -0.509 4.509 5 H 0.054 0.946 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 C -0.073 4.073 13 H 0.054 0.946 14 C -0.079 4.079 15 C -0.144 4.144 16 C -0.175 4.175 17 C -0.087 4.087 18 C -0.119 4.119 19 H 0.014 0.986 20 H 0.061 0.939 21 H 0.024 0.976 22 H 0.258 0.742 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -2.722 8.399 9.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.027 3.973 3 H 0.050 0.950 4 C -0.547 4.547 5 H 0.073 0.927 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.201 1.201 12 C -0.091 4.091 13 H 0.073 0.927 14 C -0.116 4.116 15 C -0.162 4.162 16 C -0.193 4.193 17 C -0.124 4.124 18 C -0.157 4.157 19 H 0.033 0.967 20 H 0.080 0.920 21 H 0.043 0.957 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.744 -2.587 8.264 8.833 hybrid contribution 0.272 -0.576 -0.884 1.089 sum 2.016 -3.163 7.380 8.279 Atomic orbital electron populations 1.21777 0.99474 0.97938 0.99663 1.18706 0.91763 0.96149 0.90640 0.95044 1.21183 1.34998 1.07751 0.90754 0.92748 1.24957 0.95546 0.94596 0.98846 1.69975 1.45477 1.14045 1.23408 0.86752 0.78661 0.80245 0.83189 1.20734 1.21473 1.20054 1.21245 0.93671 0.99087 0.95123 0.92727 1.20449 0.96778 1.01217 0.93106 1.22368 0.98671 0.99104 0.96019 1.22035 0.96433 1.03274 0.97552 1.20512 0.93667 0.99617 0.98581 1.21772 1.00805 0.98527 0.94560 0.96731 0.92001 0.95695 0.93187 0.90766 0.91264 0.89088 0.89253 0.92319 0.91756 0.92634 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.59 37.16 0.32 -2.82 16 2 C 0.05 1.14 1.74 -91.77 -0.16 0.98 16 3 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 4 C -0.51 -13.91 7.78 -34.44 -0.27 -14.18 16 5 H 0.05 1.47 7.06 -52.48 -0.37 1.10 16 6 C 0.06 1.72 5.16 -17.82 -0.09 1.63 16 7 N -0.89 -25.94 12.16 55.43 0.67 -25.27 16 8 Si 0.88 21.50 29.55 -169.99 -5.02 16.48 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C -0.07 -1.52 1.77 -90.40 -0.16 -1.68 16 13 H 0.05 1.17 8.13 -51.93 -0.42 0.75 16 14 C -0.08 -1.55 4.99 -28.18 -0.14 -1.69 16 15 C -0.14 -2.39 9.80 -35.90 -0.35 -2.74 16 16 C -0.17 -2.71 9.82 -35.67 -0.35 -3.06 16 17 C -0.09 -1.34 6.16 -27.95 -0.17 -1.51 16 18 C -0.12 -2.15 5.11 -26.52 -0.14 -2.29 16 19 H 0.01 0.30 6.58 -51.93 -0.34 -0.04 16 20 H 0.06 1.64 6.80 -51.93 -0.35 1.28 16 21 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.07 1.53 7.19 -51.93 -0.37 1.15 16 24 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 25 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 26 H 0.09 1.19 8.06 -52.48 -0.42 0.77 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 30 H 0.06 1.13 6.24 -51.93 -0.32 0.80 16 LS Contribution 239.11 15.07 3.60 3.60 Total: -1.00 -28.13 239.11 -6.95 -35.09 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.70 Total: -2.54 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -1.51 Total: -27.36 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.67 Total: -25.27 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.13 -6.95 -35.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.842 kcal (2) G-P(sol) polarization free energy of solvation -28.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds