Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47846 * 2 1 4 4 C 1.50707 * 109.46702 * 240.00047 * 2 1 3 5 5 H 1.08003 * 120.00197 * 245.48552 * 4 2 1 6 6 C 1.37875 * 120.00005 * 65.49338 * 4 2 1 7 7 N 1.31520 * 119.99627 * 9.40277 * 6 4 2 8 8 Si 1.86797 * 120.00262 * 189.40121 * 6 4 2 9 9 H 1.48501 * 109.46849 * 84.99181 * 8 6 4 10 10 H 1.48495 * 109.47355 * 204.99565 * 8 6 4 11 11 H 1.48503 * 109.46936 * 324.99883 * 8 6 4 12 12 C 1.53008 * 109.47014 * 120.00704 * 2 1 3 13 13 H 1.09002 * 109.80927 * 60.52381 * 12 2 1 14 14 C 1.53016 * 109.64018 * 181.05025 * 12 2 1 15 15 C 1.50072 * 110.14661 * 169.11956 * 14 12 2 16 16 C 1.29447 * 124.07189 * 342.86845 * 15 14 12 17 17 C 1.50541 * 124.15932 * 0.41254 * 16 15 14 18 18 C 1.53018 * 109.89275 * 342.99728 * 17 16 15 19 19 H 1.09005 * 109.46871 * 305.29835 * 1 2 3 20 20 H 1.08997 * 109.47037 * 65.28923 * 1 2 3 21 21 H 1.08993 * 109.47565 * 185.29140 * 1 2 3 22 22 H 0.97000 * 119.99714 * 180.02562 * 7 6 4 23 23 H 1.08995 * 109.36240 * 289.32391 * 14 12 2 24 24 H 1.09002 * 109.36351 * 49.05352 * 14 12 2 25 25 H 1.07997 * 117.96605 * 162.84738 * 15 14 12 26 26 H 1.08004 * 117.95845 * 180.49134 * 16 15 14 27 27 H 1.09000 * 109.62922 * 222.78168 * 17 16 15 28 28 H 1.09000 * 109.34916 * 103.04424 * 17 16 15 29 29 H 1.08997 * 109.64519 * 289.58298 * 18 17 16 30 30 H 1.09004 * 109.64782 * 169.16052 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.5781 -1.6374 -1.1340 6 6 1.7950 -0.1770 -2.4796 7 7 1.2974 1.0351 -2.5933 8 14 2.1803 -1.1759 -4.0104 9 1 1.0304 -2.0609 -4.3263 10 1 2.4266 -0.2580 -5.1514 11 1 3.3901 -2.0029 -3.7702 12 6 2.0400 -0.7214 1.2492 13 1 1.6873 -1.7528 1.2500 14 6 3.5699 -0.7009 1.2664 15 6 4.0781 -1.1638 2.6005 16 6 3.3545 -1.2204 3.6723 17 6 1.8994 -0.8387 3.7310 18 6 1.5309 -0.0014 2.5044 19 1 -0.3633 0.5939 0.8388 20 1 -0.3633 0.4296 -0.9335 21 1 -0.3634 -1.0232 0.0948 22 1 1.1302 1.4102 -3.4720 23 1 3.9490 -1.3612 0.4865 24 1 3.9198 0.3147 1.0815 25 1 5.1116 -1.4690 2.6706 26 1 3.8242 -1.5618 4.5829 27 1 1.7090 -0.2592 4.6344 28 1 1.2895 -1.7419 3.7484 29 1 1.9973 0.9810 2.5777 30 1 0.4480 0.1103 2.4488 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -29.855878 kcal Electronic energy + Delta-G solvation = -10967.460552 eV Core-core repulsion = 9147.091517 eV Total energy + Delta-G solvation = -1820.369035 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.66501 -35.93384 -33.33620 -31.55414 -29.72226 -27.16823 -24.05306 -23.59623 -20.89883 -18.73037 -18.11087 -17.01054 -16.30608 -14.97199 -14.87618 -14.39064 -14.15567 -13.98674 -13.49000 -13.16537 -12.95318 -12.72810 -12.59051 -12.22019 -11.94487 -11.85424 -11.55615 -11.15404 -10.51830 -10.47944 -10.39499 -9.74655 -8.09028 -6.16020 1.40449 1.41724 1.50444 1.52982 2.45149 3.21504 3.98944 4.07428 4.17921 4.56268 4.60027 4.68387 4.79695 4.87288 4.90822 5.02876 5.14040 5.18888 5.28886 5.31164 5.44795 5.49744 5.59358 5.67673 5.91931 6.04612 6.11245 6.20177 6.44994 6.96197 7.50075 8.99680 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.060348 B = 0.012130 C = 0.010778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.867014 B = 2307.721230 C = 2597.153103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.043 3.957 3 H -0.004 1.004 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.268 1.268 12 C -0.069 4.069 13 H 0.049 0.951 14 C -0.075 4.075 15 C -0.164 4.164 16 C -0.160 4.160 17 C -0.087 4.087 18 C -0.117 4.117 19 H 0.037 0.963 20 H 0.030 0.970 21 H 0.032 0.968 22 H 0.259 0.741 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -3.871 9.891 10.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.024 3.976 3 H 0.014 0.986 4 C -0.559 4.559 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.087 4.087 13 H 0.068 0.932 14 C -0.112 4.112 15 C -0.182 4.182 16 C -0.178 4.178 17 C -0.124 4.124 18 C -0.154 4.154 19 H 0.056 0.944 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.129 0.871 26 H 0.140 0.860 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.970 -3.747 9.764 10.642 hybrid contribution 0.182 -0.190 -1.316 1.342 sum 2.152 -3.936 8.448 9.565 Atomic orbital electron populations 1.21637 0.98781 0.98513 0.98998 1.18685 0.92363 0.94368 0.92147 0.98615 1.21527 1.34716 1.07690 0.92005 0.92997 1.25716 0.95659 0.95494 1.01859 1.70099 1.46656 1.15449 1.23977 0.85764 0.78723 0.78834 0.79540 1.20134 1.21237 1.19300 1.21108 0.94577 0.98381 0.94670 0.93226 1.20303 0.95930 0.99960 0.95022 1.22271 1.00118 1.01224 0.94633 1.22349 0.96272 1.01001 0.98159 1.20570 0.93877 0.99936 0.97981 1.21715 1.00698 0.98442 0.94541 0.94401 0.95058 0.94892 0.93251 0.92656 0.93129 0.87077 0.85972 0.89506 0.90609 0.93300 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.59 71.98 0.62 -5.25 16 2 C 0.04 2.18 1.74 -11.54 -0.02 2.16 16 3 H 0.00 -0.25 8.09 -2.39 -0.02 -0.27 16 4 C -0.52 -29.05 7.78 25.60 0.20 -28.85 16 5 H 0.05 2.85 7.06 -2.91 -0.02 2.83 16 6 C 0.01 0.61 5.16 84.65 0.44 1.05 16 7 N -0.92 -55.00 12.16 21.45 0.26 -54.74 16 8 Si 0.95 44.51 29.55 68.60 2.03 46.54 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 C -0.07 -2.86 1.77 -10.65 -0.02 -2.88 16 13 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 14 C -0.08 -2.96 4.99 29.66 0.15 -2.81 16 15 C -0.16 -5.14 9.80 27.03 0.27 -4.87 16 16 C -0.16 -4.36 9.82 27.18 0.27 -4.09 16 17 C -0.09 -2.35 6.16 29.80 0.18 -2.17 16 18 C -0.12 -4.02 5.11 30.73 0.16 -3.86 16 19 H 0.04 1.60 6.58 -2.38 -0.02 1.58 16 20 H 0.03 1.67 6.80 -2.39 -0.02 1.65 16 21 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 23 H 0.05 2.32 7.19 -2.39 -0.02 2.31 16 24 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 25 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 26 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 30 H 0.06 2.19 6.24 -2.38 -0.01 2.18 16 Total: -1.00 -60.49 239.11 5.61 -54.88 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.08 Total: 4.90 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 2.24 Total: -51.58 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.26 Total: -54.74 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -60.49 5.61 -54.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.028 kcal (2) G-P(sol) polarization free energy of solvation -60.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds