Wall clock time and date at job start Mon Mar 30 2020 01:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86792 * 119.99915 * 2 1 4 4 H 1.48505 * 109.47256 * 270.00424 * 3 2 1 5 5 H 1.48496 * 109.47310 * 30.00167 * 3 2 1 6 6 H 1.48500 * 109.47455 * 150.00426 * 3 2 1 7 7 C 1.40052 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99989 * 199.96606 * 7 2 1 9 9 C 1.40998 * 120.00311 * 19.96100 * 7 2 1 10 10 C 1.41623 * 121.10307 * 218.11074 * 9 7 2 11 11 O 1.35696 * 120.61285 * 359.97438 * 10 9 7 12 12 C 1.38343 * 118.78329 * 180.02562 * 10 9 7 13 13 N 1.31940 * 121.07000 * 359.97438 * 12 10 9 14 14 C 1.31936 * 122.49728 * 0.02562 * 13 12 10 15 15 C 1.38344 * 121.07050 * 359.97438 * 14 13 12 16 16 O 1.35695 * 120.60847 * 180.02562 * 15 14 13 17 17 H 0.96993 * 119.99577 * 359.97438 * 1 2 3 18 18 H 0.96699 * 114.00102 * 270.02826 * 11 10 9 19 19 H 1.07999 * 119.46638 * 179.72389 * 12 10 9 20 20 H 1.07994 * 119.46387 * 179.97438 * 14 13 12 21 21 H 0.96708 * 113.99564 * 275.64693 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4894 2.0465 -1.4001 5 1 1.4395 2.6526 0.7000 6 1 3.5396 1.4402 0.6999 7 6 2.0083 -1.2129 -0.0005 8 1 3.0396 -1.2412 0.3188 9 6 1.3669 -2.3971 -0.4179 10 6 1.6143 -3.6311 0.2316 11 8 2.4789 -3.7016 1.2750 12 6 0.9591 -4.7636 -0.2179 13 7 0.1169 -4.7057 -1.2319 14 6 -0.1478 -3.5817 -1.8702 15 6 0.4538 -2.3920 -1.5006 16 8 0.1742 -1.2413 -2.1633 17 1 -0.4849 0.8400 0.0004 18 1 3.3929 -3.8837 1.0169 19 1 1.1429 -5.7112 0.2664 20 1 -0.8455 -3.5906 -2.6944 21 1 0.6991 -1.1118 -2.9651 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243685.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:33 Heat of formation + Delta-G solvation = -83.967538 kcal Electronic energy + Delta-G solvation = -10680.696264 eV Core-core repulsion = 8520.888671 eV Total energy + Delta-G solvation = -2159.807593 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.71305 -38.16913 -37.07512 -35.44879 -32.01627 -30.09772 -27.63630 -23.54678 -23.33844 -19.65528 -19.32296 -17.71506 -17.57176 -16.90101 -16.32832 -15.91715 -14.67207 -14.49663 -13.70865 -13.58499 -13.28836 -12.88237 -12.77696 -12.37460 -11.94861 -11.13739 -10.98657 -10.00036 -9.60470 -9.27434 -8.69826 -6.49766 0.56505 0.84614 1.40217 1.50228 1.53427 2.21366 2.74346 3.31540 3.62646 3.96962 4.07792 4.42519 4.81632 5.13301 5.21820 5.31904 5.65090 5.99217 6.27130 6.56305 6.79088 7.16804 7.37579 7.55223 8.32737 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.051822 B = 0.018121 C = 0.014339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.177371 B = 1544.775686 C = 1952.278639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.050 3.950 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.081 0.919 9 C 0.060 3.940 10 C -0.059 4.059 11 O -0.494 6.494 12 C 0.070 3.930 13 N -0.552 5.552 14 C 0.055 3.945 15 C -0.008 4.008 16 O -0.474 6.474 17 H 0.289 0.711 18 H 0.380 0.620 19 H 0.157 0.843 20 H 0.152 0.848 21 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 0.724 -2.764 5.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.171 4.171 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.513 4.513 8 H 0.099 0.901 9 C 0.052 3.948 10 C -0.108 4.108 11 O -0.301 6.301 12 C -0.085 4.085 13 N -0.270 5.270 14 C -0.098 4.098 15 C -0.057 4.057 16 O -0.280 6.280 17 H 0.099 0.901 18 H 0.235 0.765 19 H 0.174 0.826 20 H 0.169 0.831 21 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.746 0.306 -2.222 3.546 hybrid contribution 1.311 1.252 -0.276 1.834 sum 4.057 1.558 -2.499 5.013 Atomic orbital electron populations 1.69768 1.09469 1.30932 1.30679 1.26634 0.95134 1.04084 0.91225 0.85182 0.78835 0.75842 0.79651 1.18153 1.19843 1.18410 1.19385 0.99286 0.92180 1.40411 0.90068 1.18981 0.91171 0.93931 0.90732 1.19860 1.02663 0.93952 0.94339 1.84716 1.21086 1.93972 1.30375 1.22761 0.94724 0.97446 0.93595 1.67435 1.20041 1.28299 1.11180 1.22785 0.99118 0.87939 0.99968 1.19585 1.03204 0.86230 0.96705 1.84913 1.63281 1.38729 1.41065 0.90086 0.76512 0.82568 0.83098 0.77784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.77 11.21 21.85 0.24 -41.53 14 2 C 0.05 2.47 4.49 85.29 0.38 2.86 14 3 Si 0.98 37.55 29.60 68.60 2.03 39.58 14 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 14 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 14 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 14 7 C -0.48 -25.41 8.55 23.39 0.20 -25.21 14 8 H 0.08 4.12 7.92 -2.91 -0.02 4.09 14 9 C 0.06 3.21 5.40 -20.93 -0.11 3.09 14 10 C -0.06 -2.91 6.77 23.13 0.16 -2.75 14 11 O -0.49 -21.83 13.05 -90.16 -1.18 -23.01 14 12 C 0.07 3.18 11.12 84.70 0.94 4.12 14 13 N -0.55 -26.02 10.32 -195.54 -2.02 -28.03 14 14 C 0.05 2.56 11.12 84.70 0.94 3.50 14 15 C -0.01 -0.41 6.23 23.13 0.14 -0.27 14 16 O -0.47 -22.30 10.51 -90.15 -0.95 -23.25 14 17 H 0.29 14.03 8.29 -92.71 -0.77 13.26 14 18 H 0.38 12.66 9.06 -74.06 -0.67 11.99 14 19 H 0.16 6.06 8.06 -2.91 -0.02 6.04 14 20 H 0.15 6.15 8.06 -2.91 -0.02 6.12 14 21 H 0.37 13.68 9.06 -74.05 -0.67 13.01 14 Total: -1.00 -64.10 200.15 0.73 -63.37 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.06 Total: 27.52 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 2.65 Total: -14.66 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.77 Total: -69.56 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.12 Total: -46.25 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -64.10 0.73 -63.37 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243685.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.594 kcal (2) G-P(sol) polarization free energy of solvation -64.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds