Wall clock time and date at job start Mon Mar 30 2020 01:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86803 * 120.00378 * 2 1 4 4 H 1.48495 * 109.47149 * 270.84797 * 3 2 1 5 5 H 1.48500 * 109.46804 * 30.84308 * 3 2 1 6 6 H 1.48494 * 109.47277 * 150.84222 * 3 2 1 7 7 C 1.39936 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99856 * 341.36641 * 7 2 1 9 9 C 1.41121 * 120.00192 * 161.36087 * 7 2 1 10 10 C 1.40968 * 120.66258 * 331.98206 * 9 7 2 11 11 C 1.38408 * 118.22408 * 179.97438 * 10 9 7 12 12 O 1.35976 * 120.26904 * 179.97438 * 11 10 9 13 13 C 1.39166 * 119.46932 * 359.97438 * 11 10 9 14 14 N 1.32009 * 121.32928 * 359.74103 * 13 11 10 15 15 C 1.32018 * 121.94481 * 0.53804 * 14 13 11 16 16 O 1.35455 * 119.81839 * 179.75086 * 15 14 13 17 17 H 0.97001 * 119.99672 * 359.97438 * 1 2 3 18 18 H 1.08002 * 120.88739 * 359.94820 * 10 9 7 19 19 H 0.96699 * 113.99754 * 89.98951 * 12 11 10 20 20 H 1.08000 * 119.33487 * 180.02562 * 13 11 10 21 21 H 0.96704 * 113.99496 * 274.87623 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4723 2.0567 -1.3999 5 1 1.4492 2.6474 0.7178 6 1 3.5490 1.4350 0.6821 7 6 2.0083 -1.2119 0.0005 8 1 1.5107 -2.1225 0.2998 9 6 3.3640 -1.2442 -0.3900 10 6 3.8727 -0.2956 -1.3003 11 6 5.2101 -0.3737 -1.6480 12 8 5.7442 0.5198 -2.5229 13 6 6.0039 -1.3742 -1.0952 14 7 5.5086 -2.2494 -0.2400 15 6 4.2401 -2.2283 0.1252 16 8 3.7762 -3.1506 1.0021 17 1 -0.4850 0.8401 0.0004 18 1 3.2358 0.4715 -1.7155 19 1 6.1045 1.3132 -2.1038 20 1 7.0473 -1.4329 -1.3677 21 1 3.5083 -3.9840 0.5912 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288224.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:01 Heat of formation + Delta-G solvation = -60.656171 kcal Electronic energy + Delta-G solvation = -10555.461483 eV Core-core repulsion = 8396.664747 eV Total energy + Delta-G solvation = -2158.796736 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.19252 -36.99178 -35.04757 -34.14498 -31.40906 -28.39814 -25.59553 -22.52430 -21.33997 -18.23807 -17.62736 -16.89554 -16.00962 -15.06034 -14.85601 -14.20236 -13.36577 -12.70678 -12.49456 -12.03400 -11.55364 -11.37186 -10.92981 -10.61739 -10.21851 -10.10284 -9.61703 -8.53089 -8.16536 -7.62567 -7.22962 -4.73252 2.07142 2.39722 2.93223 3.02856 3.12904 3.76209 4.21878 4.83700 4.95694 5.23254 5.95949 6.04974 6.40877 6.62670 6.81470 7.14120 7.21991 7.39509 7.95726 8.09664 8.28934 8.45487 8.80478 9.19853 9.76911 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.038041 B = 0.021957 C = 0.015014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.877927 B = 1274.898167 C = 1864.520528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.081 3.919 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.407 4.407 8 H 0.102 0.898 9 C 0.047 3.953 10 C -0.241 4.241 11 C 0.091 3.909 12 O -0.506 6.506 13 C -0.048 4.048 14 N -0.463 5.463 15 C 0.189 3.811 16 O -0.473 6.473 17 H 0.291 0.709 18 H 0.121 0.879 19 H 0.379 0.621 20 H 0.133 0.867 21 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 2.601 -1.296 4.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.141 4.141 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.435 4.435 8 H 0.120 0.880 9 C 0.040 3.960 10 C -0.266 4.266 11 C 0.046 3.954 12 O -0.314 6.314 13 C -0.204 4.204 14 N -0.181 5.181 15 C 0.004 3.996 16 O -0.276 6.276 17 H 0.102 0.898 18 H 0.139 0.861 19 H 0.233 0.767 20 H 0.151 0.849 21 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.085 2.089 -0.931 4.682 hybrid contribution -0.323 1.335 -0.399 1.431 sum 3.762 3.424 -1.330 5.258 Atomic orbital electron populations 1.69684 1.08142 1.31005 1.31943 1.26291 0.94884 1.02143 0.90818 0.86255 0.80883 0.79261 0.79292 1.19020 1.21194 1.17134 1.19416 0.92481 0.96641 1.34920 0.88048 1.18462 0.93949 0.92593 0.90974 1.21582 0.95484 1.05403 1.04139 1.19243 0.92156 0.92246 0.91803 1.84738 1.79560 1.32649 1.34440 1.21697 0.99179 0.97839 1.01666 1.66538 1.15558 1.25207 1.10844 1.19258 0.87216 0.96005 0.97152 1.84773 1.83323 1.26443 1.33055 0.89797 0.86143 0.76723 0.84928 0.77783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.87 13.93 55.55 0.77 -19.09 14 2 C 0.08 2.03 5.42 -17.33 -0.09 1.94 14 3 Si 0.92 19.99 24.55 -169.99 -4.17 15.82 14 4 H -0.26 -5.56 6.45 56.52 0.36 -5.19 14 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 14 6 H -0.25 -5.60 7.02 56.52 0.40 -5.21 14 7 C -0.41 -10.71 9.22 -37.85 -0.35 -11.06 14 8 H 0.10 2.75 7.88 -52.49 -0.41 2.34 14 9 C 0.05 1.20 5.16 -106.54 -0.55 0.65 14 10 C -0.24 -5.83 7.34 -38.49 -0.28 -6.11 14 11 C 0.09 2.04 6.72 -39.17 -0.26 1.78 14 12 O -0.51 -9.58 13.52 -19.66 -0.27 -9.85 14 13 C -0.05 -1.08 11.13 -17.13 -0.19 -1.27 14 14 N -0.46 -11.21 10.36 -12.48 -0.13 -11.34 14 15 C 0.19 4.71 7.80 -16.24 -0.13 4.58 14 16 O -0.47 -10.77 12.90 -18.06 -0.23 -11.00 14 17 H 0.29 6.60 8.30 -40.82 -0.34 6.26 14 18 H 0.12 2.87 4.48 -52.49 -0.24 2.63 14 19 H 0.38 5.17 9.06 45.56 0.41 5.58 14 20 H 0.13 2.57 8.06 -52.49 -0.42 2.15 14 21 H 0.37 6.56 9.06 45.56 0.41 6.97 14 LS Contribution 195.47 15.07 2.95 2.95 Total: -1.00 -29.61 195.47 -2.36 -31.97 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.58 Total: 10.04 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.86 Total: -9.50 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.64 Total: -30.43 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.50 Total: -20.85 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.17 Total: 15.82 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -29.61 -2.36 -31.97 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288224.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.689 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds