Wall clock time and date at job start Mon Mar 30 2020 01:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47401 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47073 * 120.00230 * 3 2 1 6 6 H 1.48501 * 109.47121 * 240.00234 * 3 2 1 7 7 C 1.37876 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00146 * 330.41600 * 7 2 1 9 9 C 1.50698 * 119.99958 * 150.42474 * 7 2 1 10 10 C 1.53001 * 109.47000 * 305.34668 * 9 7 2 11 11 C 1.53006 * 109.47236 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46877 * 359.97438 * 11 10 9 13 13 C 1.52994 * 109.47265 * 59.99938 * 12 11 10 14 14 C 1.52997 * 109.47597 * 300.00262 * 13 12 11 15 15 C 1.53002 * 109.47195 * 299.99952 * 12 11 10 16 16 C 1.52999 * 109.47319 * 65.34299 * 9 7 2 17 17 H 0.96997 * 120.00214 * 174.74288 * 1 2 3 18 18 H 1.09004 * 109.47239 * 300.00049 * 10 9 7 19 19 H 1.08998 * 109.47348 * 59.99855 * 10 9 7 20 20 H 1.08999 * 109.47035 * 239.99676 * 11 10 9 21 21 H 1.08992 * 109.47063 * 119.99753 * 11 10 9 22 22 H 1.08996 * 109.46847 * 180.02562 * 12 11 10 23 23 H 1.09003 * 109.47323 * 179.97438 * 13 12 11 24 24 H 1.09008 * 109.47065 * 60.00090 * 13 12 11 25 25 H 1.08996 * 109.47002 * 239.99988 * 14 13 12 26 26 H 1.08995 * 109.47445 * 119.99713 * 14 13 12 27 27 H 1.08995 * 109.47418 * 179.97438 * 15 12 11 28 28 H 1.08999 * 109.47111 * 300.00311 * 15 12 11 29 29 H 1.08999 * 109.47569 * 300.00419 * 16 9 7 30 30 H 1.08996 * 109.47058 * 60.00171 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 1.5701 -2.0686 0.4608 9 6 3.3642 -1.2788 -0.6447 10 6 3.2743 -0.7900 -2.0917 11 6 4.6547 -0.8766 -2.7460 12 6 5.6649 -1.4226 -1.7350 13 6 5.2281 -2.8163 -1.2794 14 6 3.8478 -2.7298 -0.6252 15 6 5.7317 -0.4883 -0.5252 16 6 4.3508 -0.4023 0.1293 17 1 -0.4850 -0.8365 -0.0770 18 1 2.5714 -1.4144 -2.6433 19 1 2.9297 0.2440 -2.1052 20 1 4.9661 0.1164 -3.0702 21 1 4.6071 -1.5419 -3.6080 22 1 6.6484 -1.4839 -2.2009 23 1 5.9481 -3.2055 -0.5594 24 1 5.1806 -3.4820 -2.1412 25 1 3.9119 -3.0776 0.4058 26 1 3.1447 -3.3543 -1.1763 27 1 6.4510 -0.8774 0.1953 28 1 6.0429 0.5047 -0.8498 29 1 4.0063 0.6317 0.1159 30 1 4.4149 -0.7505 1.1601 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261320240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:54 Heat of formation + Delta-G solvation = -35.218592 kcal Electronic energy + Delta-G solvation = -11668.751778 eV Core-core repulsion = 9848.150198 eV Total energy + Delta-G solvation = -1820.601580 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.16854 -35.17798 -32.27825 -31.68135 -31.57023 -26.08521 -23.58687 -23.32078 -21.99836 -19.64986 -17.60631 -16.77321 -16.41164 -16.37941 -15.29732 -14.70480 -13.90283 -13.30406 -13.13008 -12.95019 -12.78045 -12.76259 -12.69109 -12.37007 -12.02336 -11.68555 -11.42534 -11.11309 -10.74249 -10.42718 -10.17363 -10.11481 -8.72685 -6.27902 1.39904 1.46357 1.70099 2.46438 2.96993 3.85227 3.90162 4.05138 4.52770 4.58851 4.61104 4.63621 4.68353 4.70847 4.73476 4.81661 4.90224 5.06201 5.19157 5.21771 5.38446 5.42824 5.54392 5.56796 5.63803 5.76854 5.95287 6.06439 6.31788 6.64331 7.42480 8.59050 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.052083 B = 0.020196 C = 0.017974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.475375 B = 1386.049879 C = 1557.441372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 1.083 2.917 4 H -0.309 1.309 5 H -0.269 1.269 6 H -0.241 1.241 7 C -0.613 4.613 8 H 0.011 0.989 9 C 0.046 3.954 10 C -0.116 4.116 11 C -0.112 4.112 12 C -0.080 4.080 13 C -0.106 4.106 14 C -0.094 4.094 15 C -0.112 4.112 16 C -0.123 4.123 17 H 0.255 0.745 18 H 0.028 0.972 19 H 0.041 0.959 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 -0.831 -4.204 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.910 3.090 4 H -0.238 1.238 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.650 4.650 8 H 0.030 0.970 9 C 0.045 3.955 10 C -0.154 4.154 11 C -0.149 4.149 12 C -0.098 4.098 13 C -0.144 4.144 14 C -0.132 4.132 15 C -0.150 4.150 16 C -0.160 4.160 17 H 0.063 0.937 18 H 0.047 0.953 19 H 0.060 0.940 20 H 0.083 0.917 21 H 0.085 0.915 22 H 0.113 0.887 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.468 0.763 -4.132 14.108 hybrid contribution -1.000 -1.951 0.369 2.223 sum 12.468 -1.188 -3.764 13.078 Atomic orbital electron populations 1.70966 1.08933 1.29622 1.46913 1.26986 0.95610 1.05937 0.92179 0.83824 0.73861 0.72098 0.79256 1.23825 1.19591 1.16695 1.22129 1.04458 0.96801 1.41574 0.97022 1.18288 0.92115 0.93109 0.91996 1.21862 0.96650 0.99648 0.97206 1.21621 0.94358 1.01084 0.97845 1.21021 0.98846 0.94561 0.95419 1.21564 0.95603 0.96967 1.00229 1.21359 0.96555 0.96621 0.98648 1.21636 0.95844 0.99912 0.97580 1.21984 0.96242 0.98550 0.99266 0.93667 0.95273 0.94019 0.91667 0.91456 0.88682 0.91031 0.91497 0.94479 0.95110 0.90762 0.91463 0.94716 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.99 13.70 21.45 0.29 -59.69 16 2 C -0.01 -0.44 5.10 84.65 0.43 -0.01 16 3 Si 1.08 52.65 23.50 68.60 1.61 54.27 16 4 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 5 H -0.27 -12.17 6.80 99.48 0.68 -11.50 16 6 H -0.24 -10.42 5.58 99.48 0.55 -9.87 16 7 C -0.61 -35.98 8.41 25.60 0.22 -35.76 16 8 H 0.01 0.75 7.99 -2.91 -0.02 0.73 16 9 C 0.05 2.15 0.49 -52.94 -0.03 2.13 16 10 C -0.12 -5.08 4.66 30.60 0.14 -4.94 16 11 C -0.11 -3.65 5.71 30.60 0.17 -3.47 16 12 C -0.08 -2.34 3.19 -10.79 -0.03 -2.37 16 13 C -0.11 -3.26 5.71 30.59 0.17 -3.08 16 14 C -0.09 -3.89 4.93 30.58 0.15 -3.74 16 15 C -0.11 -3.52 5.71 30.61 0.17 -3.35 16 16 C -0.12 -5.17 4.36 30.61 0.13 -5.03 16 17 H 0.25 16.60 8.73 -92.71 -0.81 15.79 16 18 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 19 H 0.04 1.93 4.45 -2.39 -0.01 1.92 16 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 24 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.03 1.51 2.45 -2.39 -0.01 1.51 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -65.84 218.13 4.32 -61.52 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 0.88 Total: 3.54 kcal Atomic # 6 Polarization: -61.17 SS G_CDS: 1.54 Total: -59.63 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.29 Total: -59.69 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 1.61 Total: 54.27 kcal Total: -65.84 4.32 -61.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.302 kcal (2) G-P(sol) polarization free energy of solvation -65.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds