Wall clock time and date at job start Mon Mar 30 2020 02:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36819 * 120.00243 * 2 1 4 4 H 1.07989 * 120.00000 * 205.11729 * 3 2 1 5 5 C 1.39077 * 119.99622 * 25.12466 * 3 2 1 6 6 N 1.31348 * 119.99802 * 12.44996 * 5 3 2 7 7 Si 1.86800 * 119.99807 * 192.45022 * 5 3 2 8 8 H 1.48502 * 109.46942 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.46919 * 120.00117 * 7 5 3 10 10 H 1.48497 * 109.46689 * 239.99891 * 7 5 3 11 11 C 1.34780 * 120.00079 * 180.02562 * 2 1 3 12 12 O 1.21661 * 120.00364 * 179.97438 * 11 2 1 13 13 C 1.46954 * 119.99956 * 0.27032 * 11 2 1 14 14 C 1.33202 * 135.14475 * 179.36192 * 13 11 2 15 15 C 1.50767 * 97.85105 * 179.97438 * 14 13 11 16 16 C 1.50764 * 135.14110 * 359.73014 * 13 11 2 17 17 H 1.08999 * 109.46443 * 264.47004 * 1 2 3 18 18 H 1.08996 * 109.46868 * 24.46507 * 1 2 3 19 19 H 1.08998 * 109.47233 * 144.47179 * 1 2 3 20 20 H 0.96999 * 119.99673 * 180.02562 * 6 5 3 21 21 H 1.08001 * 131.07210 * 359.95553 * 14 13 11 22 22 H 1.08993 * 114.54498 * 246.79592 * 15 14 13 23 23 H 1.09004 * 114.13275 * 113.70255 * 15 14 13 24 24 H 1.09004 * 113.16435 * 295.21787 * 16 13 11 25 25 H 1.08999 * 113.17053 * 64.71116 * 16 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1525 1.2290 -0.3970 5 6 1.5525 2.3323 0.5114 6 7 0.4444 2.2404 1.2107 7 14 2.3268 4.0042 0.2037 8 1 3.5611 3.8367 -0.6049 9 1 1.3667 4.8668 -0.5304 10 1 2.6686 4.6378 1.5025 11 6 2.1389 -1.1672 -0.0005 12 8 3.3556 -1.1673 -0.0010 13 6 1.4042 -2.4399 -0.0071 14 6 1.7457 -3.7273 -0.0198 15 6 0.3549 -4.3093 -0.0163 16 6 -0.0511 -2.8337 -0.0091 17 1 -0.3632 -0.0990 1.0229 18 1 -0.3633 0.9354 -0.4256 19 1 -0.3633 -0.8363 -0.5972 20 1 0.0280 3.0407 1.5671 21 1 2.7146 -4.2043 -0.0298 22 1 0.0935 -4.8520 0.8921 23 1 0.0927 -4.8427 -0.9300 24 1 -0.5765 -2.5382 0.8990 25 1 -0.5769 -2.5278 -0.9136 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306223593.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:16 Heat of formation + Delta-G solvation = 27.908411 kcal Electronic energy + Delta-G solvation = -10751.897983 eV Core-core repulsion = 8732.774790 eV Total energy + Delta-G solvation = -2019.123193 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.18818 -37.16165 -34.62433 -31.61976 -26.96557 -26.26690 -24.39362 -24.05148 -20.31737 -17.16196 -16.89898 -15.68485 -15.15843 -14.86464 -14.20905 -13.60115 -13.07549 -12.47623 -11.91459 -11.58393 -11.39848 -11.21563 -11.09894 -10.82744 -10.34255 -10.29493 -9.98256 -9.04846 -8.47670 -8.42023 -7.65540 -6.37749 -3.89226 2.09772 3.16794 3.23954 3.31479 4.11252 4.40174 4.78422 5.00546 5.10663 5.18407 5.47942 5.60658 5.83042 6.12501 6.13978 6.36627 6.46255 6.61455 6.86179 7.19839 7.31481 7.52013 8.14980 8.48889 9.16888 9.39584 10.01810 10.66481 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.079930 B = 0.012081 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.221215 B = 2317.125007 C = 2596.543394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.429 5.429 3 C -0.304 4.304 4 H 0.101 0.899 5 C 0.030 3.970 6 N -0.875 5.875 7 Si 0.929 3.071 8 H -0.266 1.266 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.496 3.504 12 O -0.592 6.592 13 C -0.160 4.160 14 C -0.145 4.145 15 C -0.118 4.118 16 C -0.099 4.099 17 H 0.051 0.949 18 H 0.073 0.927 19 H 0.038 0.962 20 H 0.269 0.731 21 H 0.124 0.876 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -5.863 -2.037 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.146 5.146 3 C -0.432 4.432 4 H 0.118 0.882 5 C -0.174 4.174 6 N -0.513 5.513 7 Si 0.755 3.245 8 H -0.191 1.191 9 H -0.205 1.205 10 H -0.206 1.206 11 C 0.286 3.714 12 O -0.478 6.478 13 C -0.164 4.164 14 C -0.166 4.166 15 C -0.155 4.155 16 C -0.136 4.136 17 H 0.069 0.931 18 H 0.092 0.908 19 H 0.057 0.943 20 H 0.079 0.921 21 H 0.142 0.858 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.239 -5.653 -1.942 7.328 hybrid contribution 0.176 0.886 0.055 0.906 sum -4.063 -4.767 -1.887 6.541 Atomic orbital electron populations 1.21769 0.81101 1.00564 1.00659 1.43463 1.05718 1.04641 1.60730 1.19766 1.01188 0.84232 1.38005 0.88161 1.25439 0.96594 1.00395 0.94972 1.69986 1.19347 1.29893 1.32096 0.85814 0.79255 0.81063 0.78327 1.19055 1.20539 1.20608 1.17149 0.86753 0.82494 0.84987 1.90615 1.13323 1.86977 1.56923 1.23267 0.96461 0.94932 1.01699 1.24846 0.97519 0.94006 1.00254 1.21918 0.94729 0.96715 1.02107 1.22127 0.94704 0.94184 1.02567 0.93085 0.90821 0.94330 0.92101 0.85823 0.89473 0.89551 0.90102 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.37 7.84 59.85 0.47 2.84 15 2 N -0.43 -11.63 3.00 -123.60 -0.37 -12.01 15 3 C -0.30 -8.75 9.22 -15.02 -0.14 -8.89 15 4 H 0.10 3.01 7.45 -52.49 -0.39 2.62 15 5 C 0.03 0.81 5.04 -17.45 -0.09 0.72 15 6 N -0.87 -23.60 10.87 55.50 0.60 -22.99 15 7 Si 0.93 20.85 29.57 -169.99 -5.03 15.82 15 8 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 11 C 0.50 13.33 7.61 -12.73 -0.10 13.23 15 12 O -0.59 -17.96 16.82 5.22 0.09 -17.87 15 13 C -0.16 -3.40 6.72 -102.82 -0.69 -4.09 15 14 C -0.15 -2.60 11.88 -47.02 -0.56 -3.15 15 15 C -0.12 -1.61 8.55 -27.82 -0.24 -1.85 15 16 C -0.10 -1.60 5.62 -38.82 -0.22 -1.82 15 17 H 0.05 1.20 7.88 -51.93 -0.41 0.79 15 18 H 0.07 1.77 6.75 -51.93 -0.35 1.42 15 19 H 0.04 0.75 4.55 -51.93 -0.24 0.51 15 20 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 21 H 0.12 2.12 8.06 -52.49 -0.42 1.69 15 22 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.09 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.08 1.27 8.04 -51.93 -0.42 0.85 15 25 H 0.08 1.21 6.98 -51.93 -0.36 0.85 15 LS Contribution 218.37 15.07 3.29 3.29 Total: -1.00 -31.97 218.37 -5.55 -37.52 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -2.57 Total: -0.74 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.56 Total: -3.01 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.23 Total: -35.00 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.09 Total: -17.87 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -31.97 -5.55 -37.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306223593.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.425 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds