Wall clock time and date at job start Mon Mar 30 2020 02:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36819 * 120.00243 * 2 1 4 4 H 1.07989 * 120.00000 * 205.11729 * 3 2 1 5 5 C 1.39077 * 119.99622 * 25.12466 * 3 2 1 6 6 N 1.31348 * 119.99802 * 12.44996 * 5 3 2 7 7 Si 1.86800 * 119.99807 * 192.45022 * 5 3 2 8 8 H 1.48502 * 109.46942 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.46919 * 120.00117 * 7 5 3 10 10 H 1.48497 * 109.46689 * 239.99891 * 7 5 3 11 11 C 1.34780 * 120.00079 * 180.02562 * 2 1 3 12 12 O 1.21661 * 120.00364 * 179.97438 * 11 2 1 13 13 C 1.46954 * 119.99956 * 0.27032 * 11 2 1 14 14 C 1.33202 * 135.14475 * 179.36192 * 13 11 2 15 15 C 1.50767 * 97.85105 * 179.97438 * 14 13 11 16 16 C 1.50764 * 135.14110 * 359.73014 * 13 11 2 17 17 H 1.08999 * 109.46443 * 264.47004 * 1 2 3 18 18 H 1.08996 * 109.46868 * 24.46507 * 1 2 3 19 19 H 1.08998 * 109.47233 * 144.47179 * 1 2 3 20 20 H 0.96999 * 119.99673 * 180.02562 * 6 5 3 21 21 H 1.08001 * 131.07210 * 359.95553 * 14 13 11 22 22 H 1.08993 * 114.54498 * 246.79592 * 15 14 13 23 23 H 1.09004 * 114.13275 * 113.70255 * 15 14 13 24 24 H 1.09004 * 113.16435 * 295.21787 * 16 13 11 25 25 H 1.08999 * 113.17053 * 64.71116 * 16 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1525 1.2290 -0.3970 5 6 1.5525 2.3323 0.5114 6 7 0.4444 2.2404 1.2107 7 14 2.3268 4.0042 0.2037 8 1 3.5611 3.8367 -0.6049 9 1 1.3667 4.8668 -0.5304 10 1 2.6686 4.6378 1.5025 11 6 2.1389 -1.1672 -0.0005 12 8 3.3556 -1.1673 -0.0010 13 6 1.4042 -2.4399 -0.0071 14 6 1.7457 -3.7273 -0.0198 15 6 0.3549 -4.3093 -0.0163 16 6 -0.0511 -2.8337 -0.0091 17 1 -0.3632 -0.0990 1.0229 18 1 -0.3633 0.9354 -0.4256 19 1 -0.3633 -0.8363 -0.5972 20 1 0.0280 3.0407 1.5671 21 1 2.7146 -4.2043 -0.0298 22 1 0.0935 -4.8520 0.8921 23 1 0.0927 -4.8427 -0.9300 24 1 -0.5765 -2.5382 0.8990 25 1 -0.5769 -2.5278 -0.9136 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306223593.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:16 Heat of formation + Delta-G solvation = 6.289446 kcal Electronic energy + Delta-G solvation = -10752.835452 eV Core-core repulsion = 8732.774790 eV Total energy + Delta-G solvation = -2020.060662 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.86458 -38.86524 -36.72006 -33.70069 -28.81274 -27.93459 -26.07170 -25.62449 -22.03780 -19.09080 -18.76670 -17.42779 -16.86356 -16.45932 -16.07284 -15.38494 -14.93594 -13.93568 -13.81841 -13.44010 -13.18666 -12.89058 -12.66119 -12.45042 -12.14244 -12.11201 -11.36168 -11.06787 -10.45987 -10.03256 -9.68269 -8.42700 -6.06104 0.51127 1.38607 1.39215 1.53988 2.24413 2.45408 3.07088 3.10818 3.55285 3.83617 4.09354 4.38816 4.53962 4.68352 4.76253 4.97143 5.02980 5.20307 5.29704 5.33579 5.36963 5.84426 6.05481 6.43868 7.08130 7.36911 7.97381 8.60460 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.079930 B = 0.012081 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.221215 B = 2317.125007 C = 2596.543394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.445 5.445 3 C -0.353 4.353 4 H 0.070 0.930 5 C -0.001 4.001 6 N -0.890 5.890 7 Si 0.997 3.003 8 H -0.274 1.274 9 H -0.259 1.259 10 H -0.272 1.272 11 C 0.481 3.519 12 O -0.648 6.648 13 C -0.232 4.232 14 C -0.112 4.112 15 C -0.088 4.088 16 C -0.091 4.091 17 H 0.043 0.957 18 H 0.058 0.942 19 H 0.077 0.923 20 H 0.278 0.722 21 H 0.124 0.876 22 H 0.119 0.881 23 H 0.123 0.877 24 H 0.085 0.915 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 -7.008 -2.169 9.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.161 5.161 3 C -0.481 4.481 4 H 0.088 0.912 5 C -0.204 4.204 6 N -0.527 5.527 7 Si 0.819 3.181 8 H -0.198 1.198 9 H -0.184 1.184 10 H -0.198 1.198 11 C 0.273 3.727 12 O -0.539 6.539 13 C -0.235 4.235 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.128 4.128 17 H 0.061 0.939 18 H 0.077 0.923 19 H 0.095 0.905 20 H 0.088 0.912 21 H 0.142 0.858 22 H 0.137 0.863 23 H 0.141 0.859 24 H 0.103 0.897 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.027 -6.809 -2.068 9.325 hybrid contribution 0.753 1.101 0.118 1.339 sum -5.274 -5.708 -1.950 8.012 Atomic orbital electron populations 1.21741 0.78976 1.01320 1.00703 1.43716 1.07145 1.04434 1.60796 1.19724 1.01109 0.86305 1.40922 0.91187 1.26249 0.96949 1.03324 0.93829 1.70040 1.19773 1.31333 1.31552 0.84837 0.78395 0.76390 0.78431 1.19828 1.18376 1.19757 1.18109 0.86648 0.84448 0.83467 1.90537 1.15901 1.88222 1.59277 1.23190 1.00060 0.93367 1.06929 1.25519 1.00191 0.93262 0.94264 1.22049 0.89823 0.95316 1.05229 1.22137 0.91318 0.95888 1.03417 0.93872 0.92318 0.90533 0.91233 0.85777 0.86260 0.85910 0.89689 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.35 7.84 127.77 1.00 6.35 15 2 N -0.45 -25.04 3.00 -663.19 -1.99 -27.03 15 3 C -0.35 -21.28 9.22 84.12 0.78 -20.50 15 4 H 0.07 4.51 7.45 -2.92 -0.02 4.49 15 5 C 0.00 -0.04 5.04 84.97 0.43 0.39 15 6 N -0.89 -48.19 10.87 21.69 0.24 -47.95 15 7 Si 1.00 43.20 29.57 68.60 2.03 45.23 15 8 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 9 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 11 C 0.48 26.87 7.61 86.53 0.66 27.53 15 12 O -0.65 -41.67 16.82 -4.23 -0.07 -41.74 15 13 C -0.23 -9.70 6.72 -18.69 -0.13 -9.82 15 14 C -0.11 -3.69 11.88 17.45 0.21 -3.49 15 15 C -0.09 -1.91 8.55 29.89 0.26 -1.66 15 16 C -0.09 -2.63 5.62 22.77 0.13 -2.51 15 17 H 0.04 2.03 7.88 -2.39 -0.02 2.01 15 18 H 0.06 2.85 6.75 -2.39 -0.02 2.83 15 19 H 0.08 2.90 4.55 -2.39 -0.01 2.89 15 20 H 0.28 13.83 8.31 -92.71 -0.77 13.06 15 21 H 0.12 4.01 8.06 -2.91 -0.02 3.98 15 22 H 0.12 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.12 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.08 2.39 8.04 -2.39 -0.02 2.37 15 25 H 0.09 2.46 6.98 -2.39 -0.02 2.45 15 Total: -1.00 -73.60 218.37 4.72 -68.88 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.18 Total: 6.32 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 3.33 Total: -3.71 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.76 Total: -74.98 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.07 Total: -41.74 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -73.60 4.72 -68.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306223593.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.173 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds