Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.37969 * 121.63652 * 105.20659 * 3 2 1 5 5 C 1.39601 * 125.17721 * 0.27629 * 4 3 2 6 6 H 1.08001 * 119.99952 * 359.97438 * 5 4 3 7 7 C 1.40534 * 120.00330 * 180.02562 * 5 4 3 8 8 N 1.30495 * 119.99494 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00290 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47401 * 89.99402 * 9 7 5 11 11 H 1.48499 * 109.47108 * 209.99576 * 9 7 5 12 12 H 1.48501 * 109.47217 * 329.99853 * 9 7 5 13 13 S 1.76473 * 109.64514 * 180.27220 * 4 3 2 14 14 C 1.81758 * 96.90564 * 0.02562 * 13 4 3 15 15 C 1.48906 * 121.63656 * 285.49398 * 3 2 1 16 16 H 0.96999 * 119.99332 * 180.02562 * 8 7 5 17 17 H 1.09005 * 110.32122 * 241.10521 * 14 13 4 18 18 H 1.08996 * 110.41105 * 118.94078 * 14 13 4 19 19 H 1.09002 * 109.04748 * 300.30742 * 15 3 2 20 20 H 1.08995 * 109.05109 * 59.14797 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2915 0.3091 -1.1335 5 6 2.7417 0.6507 -2.3704 6 1 1.6693 0.6880 -2.4929 7 6 3.5836 0.9451 -3.4565 8 7 4.8794 0.8996 -3.3085 9 14 2.8480 1.4016 -5.1116 10 1 2.6581 2.8728 -5.1802 11 1 3.7650 0.9697 -6.1969 12 1 1.5359 0.7252 -5.2737 13 16 5.0178 0.2061 -0.7818 14 6 4.8568 -0.2734 0.9640 15 6 3.3492 -0.3377 1.2217 16 1 5.4604 1.1031 -4.0581 17 1 5.3185 0.4764 1.6066 18 1 5.3124 -1.2489 1.1339 19 1 3.0928 0.3656 2.0140 20 1 3.0864 -1.3451 1.5444 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306413776.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = -6.693291 kcal Electronic energy + Delta-G solvation = -8399.457441 eV Core-core repulsion = 6685.753582 eV Total energy + Delta-G solvation = -1713.703859 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 181.026 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.92692 -36.23605 -35.43042 -31.49049 -27.79241 -24.56855 -22.21606 -20.17025 -17.82469 -16.58479 -16.02222 -15.86453 -14.60607 -14.27084 -13.92753 -13.89261 -13.56522 -13.24402 -12.76685 -12.47190 -12.23973 -12.06670 -11.81987 -11.72485 -10.64366 -10.45948 -8.89012 -8.00332 -6.82320 0.78399 1.33014 1.38216 1.49204 1.56241 1.91488 2.12268 2.47527 2.59542 3.13980 4.08557 4.35698 4.48871 4.81014 4.95786 5.02135 5.23756 5.28447 5.69574 6.04593 6.26564 6.54282 7.35416 7.88003 Molecular weight = 181.03amu Principal moments of inertia in cm(-1) A = 0.041223 B = 0.018848 C = 0.013058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.065841 B = 1485.176067 C = 2143.776786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C 0.317 3.683 3 C -0.422 4.422 4 C 0.115 3.885 5 C -0.410 4.410 6 H 0.080 0.920 7 C 0.032 3.968 8 N -0.758 5.758 9 Si 0.999 3.001 10 H -0.254 1.254 11 H -0.247 1.247 12 H -0.267 1.267 13 S -0.060 6.060 14 C -0.142 4.142 15 C -0.012 4.012 16 H 0.316 0.684 17 H 0.103 0.897 18 H 0.103 0.897 19 H 0.050 0.950 20 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 0.451 -1.612 6.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.277 5.277 2 C 0.013 3.987 3 C -0.439 4.439 4 C -0.005 4.005 5 C -0.442 4.442 6 H 0.098 0.902 7 C -0.192 4.192 8 N -0.381 5.381 9 Si 0.817 3.183 10 H -0.178 1.178 11 H -0.170 1.170 12 H -0.191 1.191 13 S 0.181 5.819 14 C -0.291 4.291 15 C -0.050 4.050 16 H 0.130 0.870 17 H 0.121 0.879 18 H 0.121 0.879 19 H 0.068 0.932 20 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.973 0.643 -2.342 6.448 hybrid contribution -1.203 -0.069 0.270 1.235 sum 4.769 0.574 -2.072 5.232 Atomic orbital electron populations 1.80940 1.13475 1.21613 1.11658 1.25786 0.92558 0.89854 0.90508 1.17391 0.83973 1.44339 0.98217 1.21387 0.94917 0.89987 0.94240 1.19632 0.95517 1.35358 0.93649 0.90153 1.27138 0.94745 0.91992 1.05331 1.68753 1.05038 1.28426 1.35895 0.84905 0.79241 0.79907 0.74244 1.17848 1.17022 1.19100 1.86101 1.05087 1.83876 1.06867 1.24170 0.98342 1.05742 1.00831 1.19282 0.91267 0.99952 0.94541 0.87038 0.87878 0.87866 0.93193 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.59 -32.11 18.54 19.00 0.35 -31.76 14 2 C 0.32 16.71 14.58 88.33 1.29 18.00 14 3 C -0.42 -20.80 5.98 -19.23 -0.11 -20.91 14 4 C 0.12 5.82 6.17 22.54 0.14 5.95 14 5 C -0.41 -20.74 8.90 23.16 0.21 -20.54 14 6 H 0.08 4.24 7.32 -2.91 -0.02 4.22 14 7 C 0.03 1.43 5.50 85.45 0.47 1.90 14 8 N -0.76 -33.16 10.62 21.93 0.23 -32.93 14 9 Si 1.00 33.92 29.56 68.60 2.03 35.95 14 10 H -0.25 -8.36 7.11 99.48 0.71 -7.65 14 11 H -0.25 -7.50 7.11 99.48 0.71 -6.79 14 12 H -0.27 -9.53 7.11 99.48 0.71 -8.82 14 13 S -0.06 -2.62 20.09 -56.49 -1.13 -3.75 14 14 C -0.14 -5.00 7.32 72.01 0.53 -4.47 14 15 C -0.01 -0.47 6.15 29.32 0.18 -0.29 14 16 H 0.32 11.98 8.29 -92.71 -0.77 11.21 14 17 H 0.10 3.14 8.14 -2.38 -0.02 3.12 14 18 H 0.10 3.14 8.14 -2.39 -0.02 3.12 14 19 H 0.05 1.90 8.14 -2.39 -0.02 1.88 14 20 H 0.05 1.88 8.14 -2.39 -0.02 1.86 14 Total: -1.00 -56.12 202.89 5.43 -50.69 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: 1.25 Total: 2.15 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 2.70 Total: -20.35 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: 0.59 Total: -64.69 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -1.13 Total: -3.75 kcal Total: -56.12 5.43 -50.69 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306413776.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.998 kcal (2) G-P(sol) polarization free energy of solvation -56.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds