Wall clock time and date at job start Mon Mar 30 2020 02:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00235 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00186 * 3 2 1 6 6 H 1.48498 * 109.47352 * 150.00236 * 3 2 1 7 7 C 1.39073 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99938 * 0.26615 * 7 2 1 9 9 N 1.36825 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99812 * 179.97438 * 9 7 2 11 11 O 1.21659 * 119.99943 * 0.02562 * 10 9 7 12 12 C 1.46946 * 120.00107 * 179.97438 * 10 9 7 13 13 C 1.33127 * 120.00326 * 180.02562 * 12 10 9 14 14 C 1.50696 * 119.99980 * 180.02562 * 13 12 10 15 15 C 1.53001 * 117.49396 * 188.62194 * 14 13 12 16 16 C 1.53001 * 117.49949 * 119.99769 * 14 13 12 17 17 H 0.97005 * 119.99990 * 359.97438 * 1 2 3 18 18 H 0.96999 * 120.00140 * 359.97438 * 9 7 2 19 19 H 1.07999 * 119.99852 * 0.02562 * 12 10 9 20 20 H 1.07999 * 119.99822 * 359.97438 * 13 12 10 21 21 H 1.08998 * 115.55043 * 334.31990 * 14 13 12 22 22 H 1.08996 * 117.50381 * 359.97438 * 15 14 13 23 23 H 1.09004 * 117.49933 * 145.02217 * 15 14 13 24 24 H 1.09001 * 117.49712 * 214.97054 * 16 14 13 25 25 H 1.08994 * 117.50024 * 359.97224 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0465 -1.4001 5 1 1.4449 2.6527 0.7001 6 1 3.5450 1.4402 0.7000 7 6 2.0088 -1.2044 -0.0005 8 1 1.4689 -2.1397 -0.0053 9 7 3.3771 -1.2043 0.0000 10 6 4.0510 -2.3715 0.0000 11 8 3.4427 -3.4251 -0.0010 12 6 5.5204 -2.3715 0.0000 13 6 6.1861 -3.5244 -0.0005 14 6 7.6931 -3.5243 0.0001 15 6 8.3996 -4.8660 -0.2040 16 6 8.3991 -4.2036 1.1752 17 1 -0.4850 0.8401 0.0004 18 1 3.8621 -0.3643 0.0004 19 1 6.0604 -1.4362 0.0004 20 1 5.6461 -4.4597 -0.0005 21 1 8.1633 -2.6378 -0.4253 22 1 7.7744 -5.7488 -0.3383 23 1 9.3349 -4.8623 -0.7638 24 1 9.3341 -3.7641 1.5227 25 1 7.7737 -4.6501 1.9481 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306439125.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:36 Heat of formation + Delta-G solvation = 0.219045 kcal Electronic energy + Delta-G solvation = -10088.779672 eV Core-core repulsion = 8068.455777 eV Total energy + Delta-G solvation = -2020.323894 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.43213 -37.28050 -34.06969 -31.88092 -31.54520 -25.67033 -23.01449 -22.36735 -20.00795 -19.12775 -18.08969 -16.13959 -15.47584 -14.89847 -14.10240 -13.57295 -13.47780 -12.80955 -12.37601 -12.02417 -11.59854 -11.30967 -11.17423 -10.88069 -10.60132 -10.38569 -10.01464 -9.63581 -8.62193 -8.55265 -8.21143 -6.38022 -3.83045 1.96847 3.03498 3.06843 3.13314 3.90762 4.06317 4.32071 4.53038 4.91569 5.03085 5.04833 5.29490 5.41333 5.59625 5.64541 5.83316 5.98892 6.09467 6.26821 6.91666 6.93660 7.55064 8.13858 8.57496 8.91591 9.39403 9.85967 10.74488 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.079884 B = 0.008555 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.422750 B = 3272.004909 C = 3544.854528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.041 3.959 3 Si 0.881 3.119 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.302 4.302 8 H 0.121 0.879 9 N -0.575 5.575 10 C 0.468 3.532 11 O -0.588 6.588 12 C -0.177 4.177 13 C -0.084 4.084 14 C -0.126 4.126 15 C -0.176 4.176 16 C -0.173 4.173 17 H 0.275 0.725 18 H 0.372 0.628 19 H 0.111 0.889 20 H 0.124 0.876 21 H 0.108 0.892 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.989 -1.230 0.415 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.163 4.163 3 Si 0.707 3.293 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.139 0.861 9 N -0.211 5.211 10 C 0.258 3.742 11 O -0.474 6.474 12 C -0.198 4.198 13 C -0.105 4.105 14 C -0.144 4.144 15 C -0.213 4.213 16 C -0.210 4.210 17 H 0.086 0.914 18 H 0.205 0.795 19 H 0.129 0.871 20 H 0.142 0.858 21 H 0.126 0.874 22 H 0.115 0.885 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.326 -1.771 0.415 14.441 hybrid contribution 0.545 1.502 0.000 1.597 sum 14.871 -0.270 0.415 14.879 Atomic orbital electron populations 1.69599 1.05782 1.27795 1.48041 1.25117 0.95556 0.98201 0.97407 0.86633 0.79896 0.83674 0.79072 1.19424 1.20003 1.19286 1.19516 0.79529 0.96772 1.47316 0.86101 1.42177 1.07564 1.06470 1.64921 1.17914 0.86962 0.84349 0.84985 1.90640 1.69817 1.30900 1.56010 1.22676 0.94703 0.98295 1.04141 1.22755 0.92075 0.98851 0.96795 1.21242 0.92510 0.96987 1.03634 1.22976 1.02276 0.96343 0.99709 1.22960 1.02003 1.04171 0.91871 0.91404 0.79451 0.87126 0.85812 0.87383 0.88465 0.88758 0.88716 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.95 55.50 0.77 -24.76 15 2 C 0.04 1.14 5.50 -17.45 -0.10 1.05 15 3 Si 0.88 19.50 27.74 -169.99 -4.71 14.79 15 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.27 -5.44 6.52 56.52 0.37 -5.07 15 7 C -0.30 -8.76 10.16 -15.01 -0.15 -8.91 15 8 H 0.12 3.98 7.38 -52.49 -0.39 3.59 15 9 N -0.58 -14.40 5.08 -12.10 -0.06 -14.46 15 10 C 0.47 11.48 7.71 -12.73 -0.10 11.38 15 11 O -0.59 -16.79 15.79 5.22 0.08 -16.71 15 12 C -0.18 -3.29 9.67 -37.84 -0.37 -3.66 15 13 C -0.08 -1.40 9.24 -36.09 -0.33 -1.73 15 14 C -0.13 -1.59 6.01 -91.77 -0.55 -2.14 15 15 C -0.18 -1.88 10.23 -26.73 -0.27 -2.15 15 16 C -0.17 -1.88 10.23 -26.73 -0.27 -2.15 15 17 H 0.28 7.39 8.31 -40.82 -0.34 7.05 15 18 H 0.37 8.15 5.74 -40.82 -0.23 7.91 15 19 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 20 H 0.12 2.25 7.49 -52.49 -0.39 1.86 15 21 H 0.11 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.10 1.05 8.14 -51.93 -0.42 0.62 15 23 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 LS Contribution 229.74 15.07 3.46 3.46 Total: -1.00 -32.15 229.74 -5.32 -37.47 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -2.72 Total: 8.53 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.14 Total: -8.32 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.71 Total: -39.22 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.08 Total: -16.71 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.15 -5.32 -37.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439125.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.691 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds