Wall clock time and date at job start Mon Mar 30 2020 02:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00235 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00186 * 3 2 1 6 6 H 1.48498 * 109.47352 * 150.00236 * 3 2 1 7 7 C 1.39073 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99938 * 0.26615 * 7 2 1 9 9 N 1.36825 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99812 * 179.97438 * 9 7 2 11 11 O 1.21659 * 119.99943 * 0.02562 * 10 9 7 12 12 C 1.46946 * 120.00107 * 179.97438 * 10 9 7 13 13 C 1.33127 * 120.00326 * 180.02562 * 12 10 9 14 14 C 1.50696 * 119.99980 * 180.02562 * 13 12 10 15 15 C 1.53001 * 117.49396 * 188.62194 * 14 13 12 16 16 C 1.53001 * 117.49949 * 119.99769 * 14 13 12 17 17 H 0.97005 * 119.99990 * 359.97438 * 1 2 3 18 18 H 0.96999 * 120.00140 * 359.97438 * 9 7 2 19 19 H 1.07999 * 119.99852 * 0.02562 * 12 10 9 20 20 H 1.07999 * 119.99822 * 359.97438 * 13 12 10 21 21 H 1.08998 * 115.55043 * 334.31990 * 14 13 12 22 22 H 1.08996 * 117.50381 * 359.97438 * 15 14 13 23 23 H 1.09004 * 117.49933 * 145.02217 * 15 14 13 24 24 H 1.09001 * 117.49712 * 214.97054 * 16 14 13 25 25 H 1.08994 * 117.50024 * 359.97224 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0465 -1.4001 5 1 1.4449 2.6527 0.7001 6 1 3.5450 1.4402 0.7000 7 6 2.0088 -1.2044 -0.0005 8 1 1.4689 -2.1397 -0.0053 9 7 3.3771 -1.2043 0.0000 10 6 4.0510 -2.3715 0.0000 11 8 3.4427 -3.4251 -0.0010 12 6 5.5204 -2.3715 0.0000 13 6 6.1861 -3.5244 -0.0005 14 6 7.6931 -3.5243 0.0001 15 6 8.3996 -4.8660 -0.2040 16 6 8.3991 -4.2036 1.1752 17 1 -0.4850 0.8401 0.0004 18 1 3.8621 -0.3643 0.0004 19 1 6.0604 -1.4362 0.0004 20 1 5.6461 -4.4597 -0.0005 21 1 8.1633 -2.6378 -0.4253 22 1 7.7744 -5.7488 -0.3383 23 1 9.3349 -4.8623 -0.7638 24 1 9.3341 -3.7641 1.5227 25 1 7.7737 -4.6501 1.9481 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306439125.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:36 Heat of formation + Delta-G solvation = -22.726371 kcal Electronic energy + Delta-G solvation = -10089.774660 eV Core-core repulsion = 8068.455777 eV Total energy + Delta-G solvation = -2021.318882 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.33491 -38.35923 -36.14018 -33.87339 -33.14502 -27.61728 -24.54975 -23.18701 -21.52585 -20.95336 -19.84346 -17.93352 -16.97668 -16.37261 -15.57470 -15.51432 -15.11570 -14.66126 -14.17118 -13.44243 -13.05331 -12.50976 -12.46594 -12.32147 -12.04222 -11.98312 -11.59037 -11.29722 -10.57181 -10.34279 -9.94160 -8.49110 -6.07115 0.48950 1.28882 1.37198 1.43246 2.18915 2.36766 2.90561 3.06716 3.22473 3.80094 4.00895 4.10487 4.22464 4.36922 4.53306 4.82495 5.04303 5.18598 5.29918 5.37426 5.53641 5.64065 5.90738 6.52677 6.79554 7.31807 7.89560 8.68195 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.079884 B = 0.008555 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.422750 B = 3272.004909 C = 3544.854528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.967 3.033 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.233 1.233 7 C -0.337 4.337 8 H 0.055 0.945 9 N -0.574 5.574 10 C 0.466 3.534 11 O -0.642 6.642 12 C -0.200 4.200 13 C -0.051 4.051 14 C -0.144 4.144 15 C -0.168 4.168 16 C -0.162 4.162 17 H 0.283 0.717 18 H 0.392 0.608 19 H 0.154 0.846 20 H 0.099 0.901 21 H 0.133 0.867 22 H 0.090 0.910 23 H 0.120 0.880 24 H 0.122 0.878 25 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.848 0.504 0.482 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.211 4.211 3 Si 0.786 3.214 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.156 1.156 7 C -0.466 4.466 8 H 0.074 0.926 9 N -0.213 5.213 10 C 0.257 3.743 11 O -0.531 6.531 12 C -0.220 4.220 13 C -0.072 4.072 14 C -0.162 4.162 15 C -0.204 4.204 16 C -0.199 4.199 17 H 0.093 0.907 18 H 0.228 0.772 19 H 0.172 0.828 20 H 0.117 0.883 21 H 0.150 0.850 22 H 0.108 0.892 23 H 0.139 0.861 24 H 0.140 0.860 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.210 -0.047 0.484 18.216 hybrid contribution -0.623 0.709 -0.017 0.944 sum 17.587 0.663 0.467 17.605 Atomic orbital electron populations 1.69766 1.08205 1.29679 1.48798 1.26213 0.96555 1.02864 0.95513 0.85332 0.79470 0.76328 0.80233 1.17779 1.19389 1.15605 1.19073 0.81535 0.95218 1.50750 0.92644 1.41942 1.05996 1.07636 1.65685 1.19045 0.89580 0.83283 0.82359 1.90605 1.71805 1.32880 1.57817 1.22503 0.90655 1.00953 1.07925 1.23046 0.94854 0.97197 0.92061 1.21307 0.89331 0.99321 1.06221 1.23115 1.02731 0.94722 0.99874 1.23077 1.02356 1.03063 0.91402 0.90736 0.77178 0.82818 0.88325 0.84952 0.89161 0.86142 0.86013 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.95 21.68 0.30 -55.87 15 2 C -0.01 -0.65 5.50 84.97 0.47 -0.19 15 3 Si 0.97 39.24 27.74 68.60 1.90 41.14 15 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 15 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 15 6 H -0.23 -8.07 6.52 99.48 0.65 -7.42 15 7 C -0.34 -20.50 10.16 84.11 0.85 -19.65 15 8 H 0.06 4.00 7.38 -2.91 -0.02 3.98 15 9 N -0.57 -29.03 5.08 -310.43 -1.58 -30.61 15 10 C 0.47 23.27 7.71 86.52 0.67 23.94 15 11 O -0.64 -38.70 15.79 -4.22 -0.07 -38.77 15 12 C -0.20 -7.07 9.67 23.40 0.23 -6.85 15 13 C -0.05 -1.60 9.24 24.54 0.23 -1.37 15 14 C -0.14 -3.07 6.01 -11.54 -0.07 -3.14 15 15 C -0.17 -2.94 10.23 30.60 0.31 -2.63 15 16 C -0.16 -2.86 10.23 30.60 0.31 -2.55 15 17 H 0.28 15.54 8.31 -92.70 -0.77 14.77 15 18 H 0.39 16.35 5.74 -92.71 -0.53 15.82 15 19 H 0.15 4.11 8.06 -2.91 -0.02 4.09 15 20 H 0.10 3.61 7.49 -2.91 -0.02 3.59 15 21 H 0.13 2.30 8.14 -2.39 -0.02 2.28 15 22 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.12 1.54 8.14 -2.38 -0.02 1.52 15 24 H 0.12 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 Total: -1.00 -76.03 229.74 4.16 -71.88 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.60 Total: 24.66 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 3.00 Total: -12.43 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -1.27 Total: -86.47 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.07 Total: -38.77 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.14 kcal Total: -76.03 4.16 -71.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439125.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.150 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds