Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31287 * 1 3 3 Si 1.86797 * 119.99773 * 2 1 4 4 H 1.48500 * 109.46947 * 84.64185 * 3 2 1 5 5 H 1.48497 * 109.47154 * 204.64038 * 3 2 1 6 6 H 1.48499 * 109.47384 * 324.64462 * 3 2 1 7 7 C 1.38999 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00217 * 19.01091 * 7 2 1 9 9 N 1.37504 * 119.99581 * 199.01335 * 7 2 1 10 10 C 1.36498 * 126.26961 * 19.13077 * 9 7 2 11 11 N 1.30105 * 108.96867 * 179.97438 * 10 9 7 12 12 C 1.35856 * 109.12506 * 0.02562 * 11 10 9 13 13 C 1.47301 * 126.15271 * 180.02562 * 12 11 10 14 14 N 1.34769 * 120.00067 * 0.02562 * 13 12 11 15 15 O 1.21634 * 119.99714 * 180.02562 * 13 12 11 16 16 C 1.36436 * 107.69595 * 359.73445 * 12 11 10 17 17 H 0.96998 * 119.99624 * 180.80853 * 1 2 3 18 18 H 1.08001 * 125.51359 * 359.97438 * 10 9 7 19 19 H 0.97001 * 120.00289 * 0.02562 * 14 13 12 20 20 H 0.96998 * 120.00106 * 180.02562 * 14 13 12 21 21 H 1.07997 * 126.62927 * 180.27222 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.3810 2.1118 1.3940 5 1 3.5964 1.4102 -0.5837 6 1 1.5054 2.6174 -0.8101 7 6 2.0079 -1.2038 0.0005 8 1 1.5121 -2.1137 -0.3037 9 7 3.3266 -1.2360 0.3885 10 6 3.9747 -0.2879 1.1263 11 7 5.2104 -0.6573 1.2980 12 6 5.4078 -1.8514 0.6809 13 6 6.6696 -2.6103 0.6400 14 7 7.7671 -2.1266 1.2548 15 8 6.7210 -3.6735 0.0515 16 6 4.2255 -2.2243 0.1113 17 1 -0.4849 -0.8400 0.0119 18 1 3.5332 0.6217 1.5060 19 1 7.7260 -1.2788 1.7244 20 1 8.5981 -2.6261 1.2276 21 1 4.0379 -3.1265 -0.4521 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306462264.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = 6.723514 kcal Electronic energy + Delta-G solvation = -10386.847106 eV Core-core repulsion = 8263.264923 eV Total energy + Delta-G solvation = -2123.582183 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.97910 -38.26604 -34.24201 -33.00480 -31.56826 -28.75950 -25.19516 -22.47547 -20.97941 -19.38971 -18.50607 -16.95644 -16.05938 -15.47405 -14.65678 -14.04208 -13.77216 -13.32723 -12.98478 -12.81592 -12.38900 -11.16699 -10.43588 -10.14768 -9.81151 -9.58510 -9.22405 -9.15823 -8.79693 -7.59258 -7.54544 -4.81735 2.54120 2.93559 3.10904 3.26280 3.36632 3.78541 4.09388 4.44942 4.46249 4.69046 5.30527 5.98329 6.21958 6.46284 6.85238 7.25548 7.29352 7.50794 7.90064 7.96797 8.18459 8.78986 8.93857 9.06024 9.87824 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.079058 B = 0.013082 C = 0.011618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.086085 B = 2139.821774 C = 2409.412971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 1.051 2.949 4 H -0.269 1.269 5 H -0.262 1.262 6 H -0.277 1.277 7 C -0.424 4.424 8 H 0.111 0.889 9 N -0.258 5.258 10 C 0.089 3.911 11 N -0.479 5.479 12 C -0.108 4.108 13 C 0.618 3.382 14 N -0.852 5.852 15 O -0.570 6.570 16 C -0.026 4.026 17 H 0.287 0.713 18 H 0.187 0.813 19 H 0.406 0.594 20 H 0.393 0.607 21 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 1.571 1.836 7.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.876 3.124 4 H -0.196 1.196 5 H -0.187 1.187 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.129 0.871 9 N 0.079 4.921 10 C -0.189 4.189 11 N -0.201 5.201 12 C -0.242 4.242 13 C 0.406 3.594 14 N -0.414 5.414 15 O -0.449 6.449 16 C -0.175 4.175 17 H 0.099 0.901 18 H 0.203 0.797 19 H 0.235 0.765 20 H 0.223 0.777 21 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.554 3.047 1.816 7.452 hybrid contribution -0.429 -1.937 -0.193 1.993 sum 6.124 1.110 1.623 6.432 Atomic orbital electron populations 1.70768 1.06354 1.32103 1.35527 1.26692 0.96132 1.02737 0.92249 0.83920 0.76001 0.74087 0.78425 1.19566 1.18655 1.20312 1.21168 0.83637 0.99572 1.50931 0.87100 1.41905 1.08744 1.13192 1.28289 1.24381 0.89903 0.99279 1.05299 1.70159 1.16019 1.11608 1.22283 1.19867 0.94256 0.97435 1.12634 1.17027 0.82431 0.83361 0.76592 1.43603 1.12482 1.27115 1.58175 1.90741 1.85400 1.23172 1.45556 1.22297 0.88820 0.98059 1.08305 0.90149 0.79699 0.76451 0.77725 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.11 13.69 55.50 0.76 -20.35 14 2 C 0.04 0.95 5.46 -17.50 -0.10 0.85 14 3 Si 1.05 22.26 25.03 -169.99 -4.25 18.00 14 4 H -0.27 -5.26 6.79 56.52 0.38 -4.87 14 5 H -0.26 -5.63 6.55 56.52 0.37 -5.26 14 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 14 7 C -0.42 -10.87 10.39 -14.72 -0.15 -11.03 14 8 H 0.11 2.89 8.06 -52.49 -0.42 2.47 14 9 N -0.26 -6.42 2.77 -62.92 -0.17 -6.60 14 10 C 0.09 2.11 9.60 -89.36 -0.86 1.25 14 11 N -0.48 -11.02 10.98 -10.87 -0.12 -11.14 14 12 C -0.11 -2.49 6.97 -83.05 -0.58 -3.07 14 13 C 0.62 12.83 8.08 -12.58 -0.10 12.72 14 14 N -0.85 -13.22 8.87 30.40 0.27 -12.95 14 15 O -0.57 -13.16 17.71 5.25 0.09 -13.07 14 16 C -0.03 -0.62 11.22 -16.15 -0.18 -0.80 14 17 H 0.29 7.17 8.72 -40.82 -0.36 6.81 14 18 H 0.19 4.04 4.32 -52.49 -0.23 3.82 14 19 H 0.41 5.79 8.54 -40.82 -0.35 5.45 14 20 H 0.39 4.94 8.93 -40.82 -0.36 4.58 14 21 H 0.17 3.69 8.06 -52.49 -0.42 3.27 14 LS Contribution 197.84 15.07 2.98 2.98 Total: -1.00 -28.88 197.84 -3.40 -32.28 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -0.99 Total: 10.92 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.97 Total: -0.07 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.74 Total: -51.05 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.25 Total: 18.00 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -28.88 -3.40 -32.28 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306462264.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.000 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds