Wall clock time and date at job start Mon Mar 30 2020 01:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31326 * 1 3 3 Si 1.86792 * 120.00539 * 2 1 4 4 H 1.48497 * 109.47383 * 270.00071 * 3 2 1 5 5 H 1.48502 * 109.46803 * 29.99730 * 3 2 1 6 6 H 1.48494 * 109.47617 * 149.99610 * 3 2 1 7 7 C 1.39003 * 119.99461 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99795 * 199.90099 * 7 2 1 9 9 N 1.37302 * 120.00058 * 19.90677 * 7 2 1 10 10 C 1.34021 * 119.00980 * 222.17334 * 9 7 2 11 11 O 1.21587 * 118.62098 * 359.73877 * 10 9 7 12 12 C 1.46385 * 122.75566 * 179.71880 * 10 9 7 13 13 C 1.33428 * 120.69751 * 359.97438 * 12 10 9 14 14 C 1.51381 * 118.04158 * 0.02562 * 13 12 10 15 15 C 1.34692 * 119.01480 * 41.89724 * 9 7 2 16 16 O 1.21230 * 120.54354 * 0.28938 * 15 9 7 17 17 H 0.97001 * 119.99382 * 0.02562 * 1 2 3 18 18 H 1.08008 * 119.65398 * 179.97438 * 12 10 9 19 19 H 1.07999 * 120.98026 * 180.02562 * 13 12 10 20 20 H 1.09002 * 107.81806 * 122.06312 * 14 13 12 21 21 H 1.09004 * 107.81462 * 237.98414 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2474 1.6176 0.0000 4 1 2.4949 2.0463 -1.4000 5 1 1.4448 2.6526 0.7000 6 1 3.5448 1.4400 0.7001 7 6 2.0082 -1.2039 0.0005 8 1 3.0398 -1.2317 0.3189 9 7 1.3831 -2.3575 -0.4038 10 6 1.5849 -3.4846 0.2928 11 8 2.3211 -3.4477 1.2597 12 6 0.9558 -4.7580 -0.0614 13 6 0.1400 -4.8453 -1.1136 14 6 -0.1119 -3.5922 -1.9248 15 6 0.5811 -2.3215 -1.4853 16 8 0.4170 -1.2874 -2.0965 17 1 -0.4849 0.8401 -0.0004 18 1 1.1540 -5.6362 0.5353 19 1 -0.3269 -5.7824 -1.3788 20 1 0.1852 -3.7956 -2.9536 21 1 -1.1855 -3.4037 -1.9226 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306469152.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:47 Heat of formation + Delta-G solvation = -66.361736 kcal Electronic energy + Delta-G solvation = -10824.592591 eV Core-core repulsion = 8665.548443 eV Total energy + Delta-G solvation = -2159.044148 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.91338 -39.11120 -36.02621 -35.79838 -33.50714 -29.43518 -27.55097 -23.84428 -23.53122 -20.00862 -18.42563 -17.58438 -17.38650 -16.74965 -16.27614 -15.40194 -15.03201 -14.83957 -14.17068 -13.79598 -13.49747 -13.01276 -12.87258 -12.56585 -12.20844 -11.24957 -10.87682 -10.71106 -10.29786 -9.89670 -8.54383 -6.40098 0.28793 1.31794 1.38364 1.46959 1.58652 2.17765 2.60113 2.75779 3.10639 3.39893 3.86902 4.04445 4.55345 4.59528 5.01257 5.28464 5.33186 5.41815 5.92837 6.22384 6.70233 7.01220 7.44572 7.75572 8.57795 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.058073 B = 0.018210 C = 0.014913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.035822 B = 1537.228538 C = 1877.145976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.030 3.970 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.404 4.404 8 H 0.076 0.924 9 N -0.422 5.422 10 C 0.494 3.506 11 O -0.588 6.588 12 C -0.226 4.226 13 C -0.036 4.036 14 C -0.134 4.134 15 C 0.486 3.514 16 O -0.528 6.528 17 H 0.273 0.727 18 H 0.167 0.833 19 H 0.211 0.789 20 H 0.147 0.853 21 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -8.478 -4.848 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.178 4.178 3 Si 0.812 3.188 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.530 4.530 8 H 0.094 0.906 9 N -0.152 5.152 10 C 0.290 3.710 11 O -0.471 6.471 12 C -0.247 4.247 13 C -0.055 4.055 14 C -0.172 4.172 15 C 0.278 3.722 16 O -0.404 6.404 17 H 0.083 0.917 18 H 0.184 0.816 19 H 0.228 0.772 20 H 0.165 0.835 21 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.690 -7.809 -4.703 9.504 hybrid contribution 0.444 1.089 0.349 1.226 sum -2.246 -6.720 -4.354 8.316 Atomic orbital electron populations 1.69895 1.08063 1.29228 1.42977 1.26216 0.95887 1.03271 0.92424 0.85015 0.78570 0.76515 0.78655 1.19634 1.19261 1.18630 1.19409 0.96807 0.85705 1.51040 0.90592 1.42621 1.39676 1.09563 1.23329 1.19888 0.82482 0.86446 0.82165 1.90582 1.39783 1.87443 1.29331 1.22894 1.03645 0.95056 1.03093 1.24441 0.91624 0.98742 0.90673 1.21182 1.03409 0.89285 1.03350 1.21687 0.79921 0.91409 0.79141 1.90529 1.60860 1.34371 1.54627 0.91716 0.81581 0.77249 0.83542 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.80 11.61 21.67 0.25 -52.55 14 2 C 0.03 1.76 4.29 84.95 0.36 2.13 14 3 Si 0.99 46.85 29.60 68.60 2.03 48.88 14 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 14 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 14 6 H -0.26 -11.97 7.11 99.48 0.71 -11.27 14 7 C -0.40 -24.99 8.46 84.02 0.71 -24.27 14 8 H 0.08 4.84 7.76 -2.91 -0.02 4.82 14 9 N -0.42 -23.41 2.61 -587.49 -1.53 -24.95 14 10 C 0.49 24.82 7.50 86.48 0.65 25.46 14 11 O -0.59 -34.18 16.74 -3.99 -0.07 -34.24 14 12 C -0.23 -7.45 10.02 23.30 0.23 -7.21 14 13 C -0.04 -0.83 10.50 24.81 0.26 -0.57 14 14 C -0.13 -4.01 5.99 29.50 0.18 -3.83 14 15 C 0.49 23.97 7.04 87.85 0.62 24.59 14 16 O -0.53 -30.12 14.66 -2.87 -0.04 -30.16 14 17 H 0.27 15.58 8.31 -92.71 -0.77 14.81 14 18 H 0.17 4.42 8.06 -2.91 -0.02 4.40 14 19 H 0.21 2.07 8.06 -2.91 -0.02 2.04 14 20 H 0.15 3.36 8.14 -2.39 -0.02 3.34 14 21 H 0.13 3.52 8.14 -2.39 -0.02 3.50 14 Total: -1.00 -83.03 198.81 4.89 -78.13 By element: Atomic # 1 Polarization: -2.65 SS G_CDS: 1.24 Total: -1.41 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 3.01 Total: 16.30 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.28 Total: -77.50 kcal Atomic # 8 Polarization: -64.29 SS G_CDS: -0.11 Total: -64.40 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -83.03 4.89 -78.13 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306469152.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.772 kcal (2) G-P(sol) polarization free energy of solvation -83.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds