Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38265 * 120.48269 * 2 1 4 4 C 1.38792 * 118.62631 * 179.75915 * 3 2 1 5 5 C 1.39173 * 119.53319 * 0.54622 * 4 3 2 6 6 F 1.35101 * 119.53022 * 179.72303 * 5 4 3 7 7 N 1.31583 * 120.94470 * 359.69857 * 5 4 3 8 8 C 1.33681 * 121.47638 * 0.02562 * 7 5 4 9 9 C 1.41373 * 119.81061 * 179.97438 * 8 7 5 10 10 H 1.07995 * 119.99893 * 172.84665 * 9 8 7 11 11 C 1.40030 * 119.99852 * 352.84775 * 9 8 7 12 12 N 1.30742 * 119.99904 * 6.20723 * 11 9 8 13 13 Si 1.86797 * 120.00227 * 186.20610 * 11 9 8 14 14 H 1.48499 * 109.47135 * 94.97580 * 13 11 9 15 15 H 1.48493 * 109.47556 * 214.98182 * 13 11 9 16 16 H 1.48498 * 109.46769 * 334.98059 * 13 11 9 17 17 H 1.08997 * 109.46930 * 269.71444 * 1 2 3 18 18 H 1.09003 * 109.47159 * 149.71848 * 1 2 3 19 19 H 1.08997 * 109.47443 * 29.72113 * 1 2 3 20 20 H 1.08001 * 120.68091 * 0.02562 * 3 2 1 21 21 H 1.08005 * 120.23455 * 180.28417 * 4 3 2 22 22 H 0.97002 * 120.00153 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1915 0.0000 4 6 3.5955 1.1466 0.0051 5 6 4.2420 -0.0859 -0.0015 6 9 5.5923 -0.1295 -0.0021 7 7 3.5569 -1.2093 -0.0065 8 6 2.2201 -1.2116 -0.0061 9 6 1.5194 -2.4394 -0.0122 10 1 0.4458 -2.4491 0.1046 11 6 2.2174 -3.6431 -0.1696 12 7 3.5247 -3.6429 -0.1892 13 14 1.2809 -5.2491 -0.3517 14 1 1.1170 -5.5658 -1.7933 15 1 2.0369 -6.3411 0.3123 16 1 -0.0560 -5.1168 0.2810 17 1 -0.3633 -0.0051 1.0276 18 1 -0.3633 -0.8875 -0.5182 19 1 -0.3634 0.8924 -0.5095 20 1 1.6874 2.1376 0.0004 21 1 4.1693 2.0616 0.0099 22 1 4.0083 -4.4766 -0.2986 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306790902.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = -21.925971 kcal Electronic energy + Delta-G solvation = -10422.345339 eV Core-core repulsion = 8277.600860 eV Total energy + Delta-G solvation = -2144.744479 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.59402 -38.21012 -33.69125 -31.96158 -30.37389 -26.72687 -25.00020 -21.82007 -20.43654 -17.77203 -16.48269 -15.01902 -14.85406 -14.56944 -13.87234 -13.11665 -12.78394 -12.66526 -12.03756 -11.49934 -11.33409 -11.12548 -11.00211 -10.87311 -10.44143 -9.93805 -9.42616 -8.28934 -7.81065 -7.44018 -6.53547 -4.66833 2.55876 2.82745 3.03706 3.07293 3.10913 3.86434 4.59139 5.25875 5.63168 5.93659 6.17406 6.41013 6.43226 6.55951 6.69851 6.74308 7.05647 7.34315 7.38825 7.62404 7.92888 8.08519 8.53136 8.76990 9.79632 10.18247 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.044362 B = 0.017101 C = 0.012437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.021502 B = 1636.960377 C = 2250.890821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.256 4.256 3 C -0.036 4.036 4 C -0.341 4.341 5 C 0.318 3.682 6 F -0.145 7.145 7 N -0.514 5.514 8 C 0.280 3.720 9 C -0.421 4.421 10 H 0.095 0.905 11 C 0.065 3.935 12 N -0.707 5.707 13 Si 0.911 3.089 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.259 1.259 17 H 0.045 0.955 18 H 0.062 0.938 19 H 0.040 0.960 20 H 0.105 0.895 21 H 0.104 0.896 22 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 1.414 -0.180 3.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.260 4.260 3 C -0.060 4.060 4 C -0.366 4.366 5 C 0.156 3.844 6 F -0.125 7.125 7 N -0.233 5.233 8 C 0.156 3.844 9 C -0.452 4.452 10 H 0.113 0.887 11 C -0.162 4.162 12 N -0.328 5.328 13 Si 0.735 3.265 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.183 1.183 17 H 0.064 0.936 18 H 0.081 0.919 19 H 0.059 0.941 20 H 0.123 0.877 21 H 0.123 0.877 22 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.977 0.463 -0.196 3.020 hybrid contribution -0.331 0.152 -0.093 0.376 sum -3.308 0.615 -0.289 3.377 Atomic orbital electron populations 1.20320 0.92500 1.00668 1.00048 1.20543 0.95768 0.93759 1.15969 1.20573 0.92745 0.96564 0.96129 1.20902 0.95227 0.95847 1.24603 1.18564 0.77620 0.91218 0.96958 1.91441 1.29849 1.97349 1.93821 1.68107 1.08852 1.25366 1.20928 1.18091 0.85846 0.92016 0.88484 1.19763 0.95160 0.89238 1.41024 0.88715 1.26185 0.94939 1.01334 0.93747 1.70145 1.07422 1.28265 1.26950 0.86247 0.80497 0.80411 0.79365 1.19316 1.19978 1.18290 0.93601 0.91949 0.94121 0.87682 0.87737 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.47 36.00 0.34 -1.18 14 2 C -0.26 -6.11 5.96 -103.73 -0.62 -6.72 14 3 C -0.04 -0.82 9.84 -39.37 -0.39 -1.20 14 4 C -0.34 -8.05 10.10 -39.03 -0.39 -8.45 14 5 C 0.32 8.47 8.41 -17.31 -0.15 8.32 14 6 F -0.15 -3.70 17.29 2.25 0.04 -3.66 14 7 N -0.51 -14.86 7.91 -11.44 -0.09 -14.95 14 8 C 0.28 7.65 6.54 -84.98 -0.56 7.09 14 9 C -0.42 -10.96 8.60 -37.72 -0.32 -11.29 14 10 H 0.09 2.24 6.16 -52.49 -0.32 1.92 14 11 C 0.06 1.63 5.49 -17.34 -0.10 1.53 14 12 N -0.71 -19.08 11.49 55.55 0.64 -18.44 14 13 Si 0.91 18.16 29.56 -169.99 -5.03 13.14 14 14 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 15 H -0.27 -5.40 7.11 56.52 0.40 -4.99 14 16 H -0.26 -4.99 7.11 56.52 0.40 -4.59 14 17 H 0.05 0.83 8.14 -51.93 -0.42 0.41 14 18 H 0.06 1.20 6.45 -51.93 -0.33 0.87 14 19 H 0.04 0.68 8.09 -51.93 -0.42 0.26 14 20 H 0.11 1.97 8.06 -52.49 -0.42 1.54 14 21 H 0.10 2.18 8.06 -52.48 -0.42 1.76 14 22 H 0.28 6.72 8.29 -40.82 -0.34 6.38 14 LS Contribution 205.22 15.07 3.09 3.09 Total: -1.00 -29.02 205.22 -5.01 -34.03 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -1.48 Total: -1.32 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.18 Total: -11.89 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.55 Total: -33.39 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -29.02 -5.01 -34.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306790902.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.105 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds