Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42898 * 110.64340 * 23.03391 * 3 2 1 5 5 C 1.55161 * 110.71401 * 146.36454 * 3 2 1 6 6 C 1.55127 * 101.48722 * 82.69622 * 5 3 2 7 7 N 1.47425 * 104.72341 * 37.29220 * 6 5 3 8 8 C 1.36931 * 125.65118 * 155.81761 * 7 6 5 9 9 H 1.08000 * 120.00644 * 179.69347 * 8 7 6 10 10 C 1.38815 * 119.99715 * 359.68984 * 8 7 6 11 11 N 1.31611 * 120.00107 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99746 * 179.72150 * 10 8 7 13 13 H 1.48500 * 109.46781 * 90.00854 * 12 10 8 14 14 H 1.48496 * 109.47225 * 210.00413 * 12 10 8 15 15 H 1.48494 * 109.47296 * 330.00424 * 12 10 8 16 16 C 1.47026 * 108.70288 * 335.55493 * 7 6 5 17 17 H 4.40754 * 5.34139 * 179.97438 * 4 1 2 18 18 H 0.96705 * 113.99136 * 298.30547 * 4 3 2 19 19 H 1.09001 * 110.99958 * 200.93820 * 5 3 2 20 20 H 1.08999 * 111.00559 * 324.78613 * 5 3 2 21 21 H 1.09002 * 110.49472 * 278.45482 * 6 5 3 22 22 H 1.08998 * 110.34320 * 156.05183 * 6 5 3 23 23 H 0.97000 * 120.00330 * 179.97438 * 11 10 8 24 24 H 1.08996 * 109.88166 * 120.70291 * 16 7 6 25 25 H 1.09005 * 109.88286 * 241.71486 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1504 -1.2297 -0.5232 5 6 3.1943 1.2092 -0.8039 6 6 3.1223 2.3419 0.2536 7 7 3.4868 1.6911 1.5252 8 6 4.0081 2.3211 2.6235 9 1 4.2382 1.7536 3.5132 10 6 4.2408 3.6892 2.5935 11 7 3.9600 4.3809 1.5096 12 14 4.9447 4.5500 4.0946 13 1 6.4276 4.5473 4.0167 14 1 4.4539 5.9509 4.1375 15 1 4.5121 3.8362 5.3228 16 6 3.1919 0.2544 1.4210 17 1 -1.0498 -0.0004 0.0000 18 1 2.8973 -2.0087 -0.0091 19 1 4.2215 1.0326 -1.1228 20 1 2.5548 1.4330 -1.6577 21 1 2.1120 2.7470 0.3108 22 1 3.8352 3.1306 0.0132 23 1 4.1223 5.3370 1.4888 24 1 4.1030 -0.3232 1.5767 25 1 2.4443 -0.0254 2.1633 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307156188.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = 36.027164 kcal Electronic energy + Delta-G solvation = -10805.026879 eV Core-core repulsion = 8786.255742 eV Total energy + Delta-G solvation = -2018.771138 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.49735 -35.17452 -32.67226 -31.58310 -29.17384 -27.10954 -24.54150 -21.29585 -20.37679 -18.37695 -16.96539 -15.91995 -14.99017 -14.63270 -14.12299 -13.07883 -12.70274 -12.63072 -11.83942 -11.26796 -10.99196 -10.82074 -10.58375 -10.42703 -10.23773 -10.14939 -9.85515 -9.62206 -9.45467 -8.67146 -6.87684 -5.67404 -3.10114 3.08064 3.14084 3.40046 3.44504 3.46853 4.41273 4.57590 4.76189 5.42190 5.47687 5.53906 5.77898 6.07693 6.31496 6.45908 6.53315 6.62509 6.69771 7.48139 7.58917 7.79414 7.90958 7.93917 8.32062 9.18493 9.78743 10.42698 11.36719 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.067833 B = 0.011920 C = 0.011751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.681063 B = 2348.510125 C = 2382.195760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.217 3.783 4 O -0.545 6.545 5 C -0.123 4.123 6 C 0.153 3.847 7 N -0.600 5.600 8 C -0.224 4.224 9 H 0.079 0.921 10 C -0.011 4.011 11 N -0.922 5.922 12 Si 0.918 3.082 13 H -0.287 1.287 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.121 3.879 17 H 0.216 0.784 18 H 0.372 0.628 19 H 0.079 0.921 20 H 0.065 0.935 21 H 0.016 0.984 22 H 0.115 0.885 23 H 0.253 0.747 24 H 0.041 0.959 25 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -7.044 -2.436 8.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.177 3.823 4 O -0.350 6.350 5 C -0.161 4.161 6 C 0.028 3.972 7 N -0.327 5.327 8 C -0.352 4.352 9 H 0.097 0.903 10 C -0.206 4.206 11 N -0.571 5.571 12 Si 0.748 3.252 13 H -0.215 1.215 14 H -0.216 1.216 15 H -0.207 1.207 16 C -0.006 4.006 17 H 0.233 0.767 18 H 0.219 0.781 19 H 0.097 0.903 20 H 0.084 0.916 21 H 0.034 0.966 22 H 0.132 0.868 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.083 -6.425 -2.807 7.660 hybrid contribution -0.303 0.040 1.224 1.262 sum -3.386 -6.385 -1.583 7.399 Atomic orbital electron populations 1.24815 0.95734 0.99894 1.01879 1.23676 0.94723 1.00460 0.99285 1.19138 0.81725 0.85524 0.95953 1.86625 1.76493 1.15894 1.55985 1.23165 1.00740 0.93579 0.98628 1.22070 0.99941 0.93156 0.81992 1.44367 1.74234 1.00893 1.13184 1.19089 1.34008 0.90844 0.91303 0.90320 1.24810 1.01655 0.96167 0.97991 1.69758 1.53838 1.06834 1.26651 0.86024 0.78709 0.78850 0.81609 1.21466 1.21594 1.20717 1.21872 0.97284 0.89054 0.92347 0.76735 0.78075 0.90266 0.91610 0.96622 0.86783 0.93584 0.94126 0.95653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.36 19.25 29.55 0.57 -2.79 15 2 C -0.18 -3.43 11.89 -37.12 -0.44 -3.87 15 3 C 0.22 4.30 1.28 -91.57 -0.12 4.19 15 4 O -0.55 -9.43 13.07 -35.23 -0.46 -9.89 15 5 C -0.12 -2.57 6.30 -24.46 -0.15 -2.73 15 6 C 0.15 3.88 5.70 -2.41 -0.01 3.86 15 7 N -0.60 -15.94 3.39 -169.93 -0.58 -16.52 15 8 C -0.22 -6.37 10.27 -15.06 -0.15 -6.53 15 9 H 0.08 2.14 7.83 -52.49 -0.41 1.73 15 10 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 15 11 N -0.92 -27.11 10.08 55.49 0.56 -26.55 15 12 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 15 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 14 H -0.29 -7.04 7.11 56.52 0.40 -6.63 15 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 16 C 0.12 2.68 6.56 -3.06 -0.02 2.66 15 17 H 0.22 2.52 7.80 -54.10 -0.42 2.10 15 18 H 0.37 4.74 9.09 45.56 0.41 5.15 15 19 H 0.08 1.64 8.14 -51.93 -0.42 1.21 15 20 H 0.07 1.26 8.02 -51.93 -0.42 0.85 15 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 22 H 0.11 3.17 5.86 -51.93 -0.30 2.87 15 23 H 0.25 7.18 8.31 -40.82 -0.34 6.84 15 24 H 0.04 0.87 8.06 -51.93 -0.42 0.45 15 25 H 0.03 0.56 7.83 -51.93 -0.41 0.15 15 LS Contribution 223.24 15.07 3.36 3.36 Total: -1.00 -31.53 223.24 -4.51 -36.04 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -1.94 Total: 2.01 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.43 Total: -5.60 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.02 Total: -43.06 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.46 Total: -9.89 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -31.53 -4.51 -36.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307156188.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.071 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds