Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42898 * 110.64340 * 23.03391 * 3 2 1 5 5 C 1.55161 * 110.71401 * 146.36454 * 3 2 1 6 6 C 1.55127 * 101.48722 * 82.69622 * 5 3 2 7 7 N 1.47425 * 104.72341 * 37.29220 * 6 5 3 8 8 C 1.36931 * 125.65118 * 155.81761 * 7 6 5 9 9 H 1.08000 * 120.00644 * 179.69347 * 8 7 6 10 10 C 1.38815 * 119.99715 * 359.68984 * 8 7 6 11 11 N 1.31611 * 120.00107 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99746 * 179.72150 * 10 8 7 13 13 H 1.48500 * 109.46781 * 90.00854 * 12 10 8 14 14 H 1.48496 * 109.47225 * 210.00413 * 12 10 8 15 15 H 1.48494 * 109.47296 * 330.00424 * 12 10 8 16 16 C 1.47026 * 108.70288 * 335.55493 * 7 6 5 17 17 H 4.40754 * 5.34139 * 179.97438 * 4 1 2 18 18 H 0.96705 * 113.99136 * 298.30547 * 4 3 2 19 19 H 1.09001 * 110.99958 * 200.93820 * 5 3 2 20 20 H 1.08999 * 111.00559 * 324.78613 * 5 3 2 21 21 H 1.09002 * 110.49472 * 278.45482 * 6 5 3 22 22 H 1.08998 * 110.34320 * 156.05183 * 6 5 3 23 23 H 0.97000 * 120.00330 * 179.97438 * 11 10 8 24 24 H 1.08996 * 109.88166 * 120.70291 * 16 7 6 25 25 H 1.09005 * 109.88286 * 241.71486 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1504 -1.2297 -0.5232 5 6 3.1943 1.2092 -0.8039 6 6 3.1223 2.3419 0.2536 7 7 3.4868 1.6911 1.5252 8 6 4.0081 2.3211 2.6235 9 1 4.2382 1.7536 3.5132 10 6 4.2408 3.6892 2.5935 11 7 3.9600 4.3809 1.5096 12 14 4.9447 4.5500 4.0946 13 1 6.4276 4.5473 4.0167 14 1 4.4539 5.9509 4.1375 15 1 4.5121 3.8362 5.3228 16 6 3.1919 0.2544 1.4210 17 1 -1.0498 -0.0004 0.0000 18 1 2.8973 -2.0087 -0.0091 19 1 4.2215 1.0326 -1.1228 20 1 2.5548 1.4330 -1.6577 21 1 2.1120 2.7470 0.3108 22 1 3.8352 3.1306 0.0132 23 1 4.1223 5.3370 1.4888 24 1 4.1030 -0.3232 1.5767 25 1 2.4443 -0.0254 2.1633 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307156188.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = 12.875419 kcal Electronic energy + Delta-G solvation = -10806.030814 eV Core-core repulsion = 8786.255742 eV Total energy + Delta-G solvation = -2019.775073 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.12861 -36.87767 -34.34646 -33.27786 -31.06168 -28.88370 -26.53503 -22.89527 -22.32533 -19.82483 -18.97275 -17.29279 -16.92111 -16.38430 -15.87435 -14.86845 -14.48550 -14.30298 -13.75922 -13.08342 -12.85651 -12.61689 -12.34368 -12.07549 -12.04007 -11.83434 -11.59793 -11.38745 -10.97792 -10.76704 -8.96595 -7.80891 -5.27321 1.47336 1.50012 1.58610 1.74480 1.77492 2.47313 3.12761 3.26208 3.43383 3.70810 3.85231 4.01110 4.54905 4.66783 4.73548 4.88693 4.95288 5.15925 5.41877 5.51661 5.71519 6.23608 6.61038 6.71655 7.04981 7.70214 8.34274 9.21657 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.067833 B = 0.011920 C = 0.011751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.681063 B = 2348.510125 C = 2382.195760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.244 4.244 3 C 0.233 3.767 4 O -0.546 6.546 5 C -0.115 4.115 6 C 0.160 3.840 7 N -0.622 5.622 8 C -0.245 4.245 9 H 0.084 0.916 10 C -0.066 4.066 11 N -0.950 5.950 12 Si 0.987 3.013 13 H -0.282 1.282 14 H -0.292 1.292 15 H -0.270 1.270 16 C 0.117 3.883 17 H 0.258 0.742 18 H 0.394 0.606 19 H 0.079 0.921 20 H 0.083 0.917 21 H -0.009 1.009 22 H 0.084 0.916 23 H 0.250 0.750 24 H 0.047 0.953 25 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 -8.041 -2.150 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.244 4.244 3 C 0.192 3.808 4 O -0.353 6.353 5 C -0.153 4.153 6 C 0.035 3.965 7 N -0.349 5.349 8 C -0.374 4.374 9 H 0.102 0.898 10 C -0.259 4.259 11 N -0.599 5.599 12 Si 0.814 3.186 13 H -0.209 1.209 14 H -0.219 1.219 15 H -0.195 1.195 16 C -0.008 4.008 17 H 0.275 0.725 18 H 0.244 0.756 19 H 0.098 0.902 20 H 0.102 0.898 21 H 0.009 0.991 22 H 0.102 0.898 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.826 -7.473 -2.518 8.765 hybrid contribution -0.143 0.282 1.125 1.169 sum -3.969 -7.191 -1.393 8.331 Atomic orbital electron populations 1.25829 0.96597 0.96979 0.98624 1.23747 0.95173 1.03250 1.02236 1.18633 0.82714 0.85886 0.93566 1.86565 1.76564 1.15988 1.56206 1.22975 1.01427 0.92934 0.97954 1.21775 0.97412 0.94077 0.83252 1.44647 1.74258 1.02856 1.13127 1.19490 1.34149 0.91520 0.92229 0.89824 1.25714 1.02287 0.96879 1.00972 1.70006 1.54720 1.06700 1.28453 0.84958 0.77899 0.77251 0.78450 1.20890 1.21852 1.19479 1.22027 0.97638 0.86756 0.94424 0.72541 0.75605 0.90215 0.89845 0.99135 0.89784 0.94036 0.93535 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 19.25 74.32 1.43 -3.34 15 2 C -0.24 -8.72 11.89 31.13 0.37 -8.35 15 3 C 0.23 8.94 1.28 -11.41 -0.01 8.92 15 4 O -0.55 -17.73 13.07 -148.98 -1.95 -19.67 15 5 C -0.11 -4.77 6.30 32.06 0.20 -4.57 15 6 C 0.16 8.28 5.70 86.93 0.50 8.78 15 7 N -0.62 -33.42 3.39 -691.54 -2.35 -35.77 15 8 C -0.25 -14.06 10.27 84.04 0.86 -13.19 15 9 H 0.08 4.55 7.83 -2.91 -0.02 4.53 15 10 C -0.07 -3.78 5.49 84.86 0.47 -3.32 15 11 N -0.95 -57.09 10.08 21.65 0.22 -56.87 15 12 Si 0.99 45.76 29.55 68.60 2.03 47.78 15 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 14 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 16 C 0.12 5.13 6.56 86.73 0.57 5.70 15 17 H 0.26 4.74 7.80 -4.43 -0.03 4.70 15 18 H 0.39 9.04 9.09 -74.05 -0.67 8.36 15 19 H 0.08 3.27 8.14 -2.39 -0.02 3.25 15 20 H 0.08 3.13 8.02 -2.39 -0.02 3.11 15 21 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 15 22 H 0.08 4.86 5.86 -2.39 -0.01 4.84 15 23 H 0.25 14.48 8.31 -92.71 -0.77 13.71 15 24 H 0.05 1.96 8.06 -2.39 -0.02 1.94 15 25 H 0.03 1.17 7.83 -2.38 -0.02 1.15 15 Total: -1.00 -67.74 223.24 2.84 -64.90 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.51 Total: 8.99 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 4.38 Total: -9.36 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -2.13 Total: -92.64 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -1.95 Total: -19.67 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -67.74 2.84 -64.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307156188.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.772 kcal (2) G-P(sol) polarization free energy of solvation -67.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds