Wall clock time and date at job start Mon Mar 30 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38417 * 120.30362 * 2 1 4 4 N 1.32130 * 121.36648 * 179.97438 * 3 2 1 5 5 C 1.31502 * 122.05602 * 0.04201 * 4 3 2 6 6 C 1.40660 * 120.42805 * 359.95831 * 5 4 3 7 7 C 1.41327 * 120.68769 * 180.29583 * 6 5 4 8 8 H 1.08002 * 119.99852 * 155.06721 * 7 6 5 9 9 C 1.39938 * 119.99964 * 335.06906 * 7 6 5 10 10 N 1.30841 * 120.00173 * 343.02545 * 9 7 6 11 11 Si 1.86803 * 120.00069 * 163.02194 * 9 7 6 12 12 H 1.48505 * 109.46881 * 60.00173 * 11 9 7 13 13 H 1.48501 * 109.47097 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47317 * 300.00342 * 11 9 7 15 15 C 1.38390 * 120.30487 * 179.97438 * 2 1 3 16 16 F 1.35100 * 120.93435 * 359.97438 * 15 2 1 17 17 H 1.08992 * 109.47054 * 270.02764 * 1 2 3 18 18 H 1.09005 * 109.46919 * 30.02954 * 1 2 3 19 19 H 1.08999 * 109.46531 * 150.02421 * 1 2 3 20 20 H 1.08004 * 119.32090 * 359.96908 * 3 2 1 21 21 H 1.08005 * 119.78334 * 179.97438 * 5 4 3 22 22 H 0.96996 * 120.00266 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2055 1.1950 0.0000 4 7 3.5266 1.2196 0.0005 5 6 4.2451 0.1182 0.0002 6 6 3.6185 -1.1412 0.0002 7 6 4.3853 -2.3283 0.0062 8 1 3.9641 -3.2412 0.4006 9 6 5.6903 -2.3209 -0.4990 10 7 6.0891 -1.3392 -1.2666 11 14 6.8630 -3.7124 -0.0773 12 1 6.2988 -4.9986 -0.5599 13 1 8.1737 -3.4707 -0.7321 14 1 7.0485 -3.7746 1.3948 15 6 2.2054 -1.1948 0.0005 16 9 1.5554 -2.3791 0.0016 17 1 -0.3633 0.0005 1.0276 18 1 -0.3633 0.8898 -0.5143 19 1 -0.3632 -0.8902 -0.5135 20 1 1.6594 2.1268 -0.0005 21 1 5.3233 0.1810 0.0002 22 1 6.9935 -1.3343 -1.6170 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307514720.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:44 Heat of formation + Delta-G solvation = -54.260624 kcal Electronic energy + Delta-G solvation = -10422.831093 eV Core-core repulsion = 8276.684478 eV Total energy + Delta-G solvation = -2146.146615 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.39688 -40.15326 -36.12213 -33.78593 -32.32604 -27.81325 -27.62601 -23.42021 -22.79237 -19.20112 -18.37730 -17.90556 -16.76664 -16.30654 -15.36324 -14.99371 -14.44260 -14.33521 -14.24071 -13.61278 -13.29953 -13.18748 -12.97162 -12.69867 -12.23021 -11.72176 -11.27155 -10.15252 -9.88330 -9.51390 -8.85527 -6.57860 0.61896 0.67981 1.36756 1.48806 1.52154 2.14884 2.60148 3.45509 3.73520 4.08401 4.23020 4.41636 4.56114 4.82196 4.99636 5.04796 5.17533 5.23897 5.46393 5.77195 5.92270 6.20540 6.58930 6.61035 7.62297 8.13824 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.061097 B = 0.014667 C = 0.012221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.175269 B = 1908.533668 C = 2290.599694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.135 4.135 3 C -0.028 4.028 4 N -0.491 5.491 5 C 0.032 3.968 6 C 0.014 3.986 7 C -0.477 4.477 8 H 0.080 0.920 9 C 0.038 3.962 10 N -0.811 5.811 11 Si 0.995 3.005 12 H -0.260 1.260 13 H -0.259 1.259 14 H -0.256 1.256 15 C -0.034 4.034 16 F -0.155 7.155 17 H 0.081 0.919 18 H 0.091 0.909 19 H 0.058 0.942 20 H 0.166 0.834 21 H 0.146 0.854 22 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 -0.937 1.493 3.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C -0.182 4.182 4 N -0.199 5.199 5 C -0.131 4.131 6 C 0.008 3.992 7 C -0.506 4.506 8 H 0.098 0.902 9 C -0.180 4.180 10 N -0.435 5.435 11 Si 0.814 3.186 12 H -0.184 1.184 13 H -0.183 1.183 14 H -0.180 1.180 15 C -0.060 4.060 16 F -0.134 7.134 17 H 0.099 0.901 18 H 0.110 0.890 19 H 0.077 0.923 20 H 0.183 0.817 21 H 0.163 0.837 22 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.959 -0.057 1.332 2.370 hybrid contribution 0.028 -1.561 -0.029 1.562 sum -1.931 -1.618 1.303 2.836 Atomic orbital electron populations 1.20600 0.88203 1.03313 1.03053 1.20919 0.98791 0.92185 1.01893 1.22202 0.89472 0.96587 1.09926 1.67142 1.08771 1.32813 1.11152 1.22749 0.99472 0.86288 1.04581 1.18953 0.90710 0.96664 0.92833 1.19708 0.98761 0.96104 1.36030 0.90167 1.26902 0.99542 1.00225 0.91283 1.69776 1.20348 1.32157 1.21261 0.85057 0.76430 0.77137 0.80004 1.18372 1.18266 1.18033 1.18224 0.90644 0.80724 1.16399 1.91256 1.81188 1.45916 1.95072 0.90091 0.89029 0.92332 0.81724 0.83653 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.09 9.87 71.24 0.70 -2.38 14 2 C -0.14 -6.01 5.89 -19.78 -0.12 -6.13 14 3 C -0.03 -1.24 10.84 84.69 0.92 -0.32 14 4 N -0.49 -25.18 10.33 -193.76 -2.00 -27.18 14 5 C 0.03 1.78 9.90 85.33 0.84 2.62 14 6 C 0.01 0.76 5.59 -21.15 -0.12 0.64 14 7 C -0.48 -25.91 8.84 23.44 0.21 -25.71 14 8 H 0.08 4.27 7.80 -2.91 -0.02 4.25 14 9 C 0.04 1.86 5.17 85.25 0.44 2.30 14 10 N -0.81 -41.09 10.96 21.83 0.24 -40.86 14 11 Si 0.99 36.71 29.59 68.60 2.03 38.74 14 12 H -0.26 -9.38 7.11 99.48 0.71 -8.68 14 13 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 14 H -0.26 -9.23 7.11 99.48 0.71 -8.53 14 15 C -0.03 -1.74 7.31 23.09 0.17 -1.57 14 16 F -0.16 -7.81 16.17 44.97 0.73 -7.08 14 17 H 0.08 2.34 8.14 -2.39 -0.02 2.32 14 18 H 0.09 2.43 8.09 -2.38 -0.02 2.41 14 19 H 0.06 1.91 7.71 -2.39 -0.02 1.90 14 20 H 0.17 5.99 8.06 -2.91 -0.02 5.96 14 21 H 0.15 8.11 6.17 -2.91 -0.02 8.09 14 22 H 0.30 13.46 8.30 -92.71 -0.77 12.69 14 Total: -1.00 -59.87 206.05 5.27 -54.60 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.23 Total: 12.33 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.05 Total: -30.55 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.76 Total: -68.04 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.73 Total: -7.08 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -59.87 5.27 -54.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307514720.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.339 kcal (2) G-P(sol) polarization free energy of solvation -59.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds