Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41385 * 126.57721 * 2 1 4 4 C 1.34515 * 106.84110 * 179.97438 * 3 2 1 5 5 O 1.34304 * 108.41686 * 359.73434 * 4 3 2 6 6 C 1.34309 * 109.47799 * 0.44244 * 5 4 3 7 7 C 1.50700 * 125.78837 * 179.82995 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.68426 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 H 1.09004 * 109.46787 * 270.04371 * 1 2 3 18 18 H 1.09002 * 109.47397 * 30.04063 * 1 2 3 19 19 H 1.09002 * 109.47581 * 150.04257 * 1 2 3 20 20 H 1.08001 * 126.57752 * 359.97438 * 3 2 1 21 21 H 1.07993 * 125.79473 * 180.02562 * 4 3 2 22 22 H 1.09004 * 109.47210 * 149.68783 * 7 6 5 23 23 H 1.08994 * 109.47121 * 29.68753 * 7 6 5 24 24 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 25 25 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6156 0.6812 0.0006 5 8 3.5847 -0.6615 0.0068 6 6 2.3086 -1.0801 0.0005 7 6 1.8522 -2.5164 0.0008 8 7 1.7048 -2.9821 -1.3803 9 6 1.3026 -4.2671 -1.6303 10 1 1.0897 -4.9357 -0.8092 11 6 1.1685 -4.7102 -2.9389 12 7 1.4284 -3.8954 -3.9395 13 14 0.6191 -6.4627 -3.2799 14 1 -0.7240 -6.6848 -2.6866 15 1 0.5557 -6.6850 -4.7468 16 1 1.5896 -7.4117 -2.6775 17 1 -0.3633 0.0008 1.0277 18 1 -0.3634 0.8896 -0.5145 19 1 -0.3634 -0.8904 -0.5132 20 1 2.0365 2.1691 -0.0004 21 1 4.5060 1.2924 0.0011 22 1 0.8937 -2.5930 0.5143 23 1 2.5901 -3.1319 0.5151 24 1 1.8963 -2.3817 -2.1177 25 1 1.3343 -4.2049 -4.8539 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307611345.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = 19.657636 kcal Electronic energy + Delta-G solvation = -10486.028316 eV Core-core repulsion = 8466.547342 eV Total energy + Delta-G solvation = -2019.480974 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.10644 -34.92636 -33.51646 -31.53494 -29.48609 -27.27946 -24.85761 -22.53870 -20.97020 -19.23660 -17.34739 -16.32965 -15.60556 -14.59071 -14.15095 -13.55627 -13.12970 -12.70805 -12.60461 -12.26109 -12.05528 -11.75908 -11.06928 -10.83928 -10.75183 -10.13812 -9.79030 -9.20769 -8.92012 -7.91369 -6.97620 -5.77024 -3.08139 2.17886 2.98565 3.44686 3.47946 3.50035 3.52475 4.60587 5.16508 5.31570 5.43973 5.56155 5.82309 5.99935 6.04857 6.11611 6.29996 6.40626 6.47028 6.55964 6.65166 7.03034 7.66977 7.67165 8.39505 9.51484 10.04961 10.41774 11.45327 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.070999 B = 0.009889 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.276820 B = 2830.670454 C = 2922.496552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.180 4.180 3 C -0.214 4.214 4 C -0.054 4.054 5 O -0.173 6.173 6 C 0.001 3.999 7 C 0.227 3.773 8 N -0.726 5.726 9 C -0.246 4.246 10 H 0.073 0.927 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.912 3.088 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.285 1.285 17 H 0.059 0.941 18 H 0.059 0.941 19 H 0.075 0.925 20 H 0.142 0.858 21 H 0.196 0.804 22 H 0.052 0.948 23 H 0.035 0.965 24 H 0.387 0.613 25 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 7.982 7.756 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.182 4.182 3 C -0.233 4.233 4 C -0.122 4.122 5 O -0.068 6.068 6 C -0.049 4.049 7 C 0.100 3.900 8 N -0.372 5.372 9 C -0.377 4.377 10 H 0.091 0.909 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.742 3.258 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.212 1.212 17 H 0.078 0.922 18 H 0.078 0.922 19 H 0.094 0.906 20 H 0.159 0.841 21 H 0.213 0.787 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.221 0.779 25 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.959 7.607 7.768 10.915 hybrid contribution -0.201 -0.389 -0.556 0.708 sum 0.758 7.218 7.212 10.232 Atomic orbital electron populations 1.20152 0.89424 1.02925 1.01297 1.20213 0.97171 0.91890 1.08929 1.21649 0.92836 0.99470 1.09338 1.23850 0.99391 0.81257 1.07727 1.84050 1.29534 1.22220 1.70998 1.22851 0.80212 0.97537 1.04308 1.19175 0.97498 0.83204 0.90079 1.42352 1.82029 1.12619 1.00191 1.19186 1.38158 0.88357 0.91966 0.90890 1.24779 1.02177 0.98279 0.95470 1.69678 1.54856 1.35031 0.98285 0.86207 0.78503 0.84182 0.76901 1.21128 1.21643 1.21159 0.92220 0.92210 0.90626 0.84062 0.78715 0.93058 0.94686 0.77869 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 9.99 36.01 0.36 -0.93 15 2 C -0.18 -3.24 6.16 -104.75 -0.65 -3.88 15 3 C -0.21 -3.34 10.87 -39.70 -0.43 -3.77 15 4 C -0.05 -0.83 12.09 29.42 0.36 -0.48 15 5 O -0.17 -3.32 10.65 5.69 0.06 -3.26 15 6 C 0.00 0.03 6.69 -35.63 -0.24 -0.21 15 7 C 0.23 4.93 6.41 -5.19 -0.03 4.90 15 8 N -0.73 -19.27 5.59 -61.09 -0.34 -19.61 15 9 C -0.25 -6.99 9.99 -15.06 -0.15 -7.14 15 10 H 0.07 1.97 7.83 -52.49 -0.41 1.56 15 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 15 12 N -0.93 -28.68 13.06 55.49 0.72 -27.95 15 13 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 15 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 17 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 18 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.07 1.34 7.78 -51.93 -0.40 0.94 15 20 H 0.14 1.79 8.06 -52.49 -0.42 1.36 15 21 H 0.20 2.08 8.06 -52.49 -0.42 1.66 15 22 H 0.05 1.05 7.76 -51.93 -0.40 0.65 15 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.39 11.04 7.66 -40.82 -0.31 10.73 15 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 LS Contribution 227.76 15.07 3.43 3.43 Total: -1.00 -31.48 227.76 -4.81 -36.28 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -2.78 Total: 5.57 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.88 Total: -11.91 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.38 Total: -47.56 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: 0.06 Total: -3.26 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.48 -4.81 -36.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307611345.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.940 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds