Wall clock time and date at job start Mon Mar 30 2020 02:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99673 * 2 1 4 4 H 1.48503 * 109.47008 * 274.98433 * 3 2 1 5 5 H 1.48499 * 109.47538 * 34.98107 * 3 2 1 6 6 H 1.48504 * 109.47185 * 154.98765 * 3 2 1 7 7 C 1.40048 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00057 * 186.15469 * 7 2 1 9 9 C 1.46371 * 119.99900 * 6.14884 * 7 2 1 10 10 O 1.21685 * 119.99988 * 353.93781 * 9 7 2 11 11 N 1.34780 * 119.99948 * 173.94172 * 9 7 2 12 12 C 1.46501 * 119.99911 * 179.97438 * 11 9 7 13 13 H 1.08995 * 115.56292 * 9.29894 * 12 11 9 14 14 C 1.52999 * 117.49687 * 223.60818 * 12 11 9 15 15 C 1.52991 * 59.99942 * 252.51378 * 14 12 11 16 16 C 1.52996 * 138.59042 * 229.11542 * 15 14 12 17 17 C 1.52987 * 138.59326 * 130.89411 * 15 14 12 18 18 H 0.96997 * 120.00344 * 0.02562 * 1 2 3 19 19 H 0.97006 * 119.99869 * 0.02562 * 11 9 7 20 20 H 1.09000 * 117.49778 * 145.02370 * 14 12 11 21 21 H 1.08998 * 117.50386 * 359.97438 * 14 12 11 22 22 H 1.09000 * 117.49515 * 336.58682 * 16 15 14 23 23 H 1.08993 * 117.50378 * 121.60898 * 16 15 14 24 24 H 1.09002 * 117.50078 * 238.38742 * 17 15 14 25 25 H 1.09007 * 117.49975 * 23.37855 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4947 2.6201 0.8026 6 1 3.5870 1.4122 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0997 9 6 1.2815 -2.4767 -0.1369 10 8 0.0647 -2.4827 -0.1388 11 7 1.9613 -3.6340 -0.2602 12 6 1.2351 -4.8991 -0.3961 13 1 0.1594 -4.8101 -0.5472 14 6 1.7378 -6.0931 0.4179 15 6 1.9536 -6.0543 -1.0963 16 6 1.7503 -6.9659 -2.3081 17 6 3.0909 -6.2589 -2.0988 18 1 -0.4850 0.8400 -0.0004 19 1 2.9313 -3.6293 -0.2583 20 1 0.9927 -6.7896 0.8023 21 1 2.6090 -5.9376 1.0542 22 1 1.7147 -8.0405 -2.1290 23 1 1.1088 -6.6012 -3.1102 24 1 3.3314 -5.4291 -2.7634 25 1 3.9376 -6.8681 -1.7821 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591794844.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:08 Heat of formation + Delta-G solvation = 13.943331 kcal Electronic energy + Delta-G solvation = -10370.263482 eV Core-core repulsion = 8350.534718 eV Total energy + Delta-G solvation = -2019.728764 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.29172 -36.51134 -33.14310 -32.33251 -30.25494 -26.20823 -22.19477 -21.71728 -19.69139 -18.80079 -17.13472 -15.43063 -15.02578 -14.71588 -14.40186 -13.58668 -12.74507 -12.51181 -11.91899 -11.33490 -11.27071 -11.12067 -11.01147 -10.50231 -10.24765 -10.00923 -9.72329 -9.48000 -8.85453 -7.64973 -7.38439 -6.21820 -4.66352 3.13465 3.20580 3.24311 3.90903 4.12354 4.16309 4.55650 4.66007 4.93053 5.27786 5.46740 5.79777 5.82224 5.94194 5.97262 6.09875 6.12343 6.19124 6.35802 6.60486 7.41979 7.89671 8.08379 8.32218 9.00149 9.49972 10.56976 10.74791 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.076145 B = 0.009580 C = 0.009121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.632551 B = 2922.104878 C = 3069.017751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.734 5.734 12 C 0.165 3.835 13 H 0.128 0.872 14 C -0.155 4.155 15 C -0.255 4.255 16 C -0.132 4.132 17 C -0.130 4.130 18 H 0.269 0.731 19 H 0.383 0.617 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -7.736 -2.000 9.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.385 5.385 12 C 0.056 3.944 13 H 0.145 0.855 14 C -0.194 4.194 15 C -0.257 4.257 16 C -0.169 4.169 17 C -0.167 4.167 18 H 0.080 0.920 19 H 0.215 0.785 20 H 0.111 0.889 21 H 0.109 0.891 22 H 0.108 0.892 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.459 -7.568 -1.987 9.006 hybrid contribution 1.024 0.630 0.000 1.203 sum 5.484 -6.938 -1.988 9.064 Atomic orbital electron populations 1.70024 1.07115 1.27369 1.35009 1.25709 0.94611 1.00337 0.92558 0.86334 0.80221 0.81356 0.78700 1.19770 1.20411 1.18855 1.20877 0.94157 0.89451 1.53709 0.91287 1.18284 0.87204 0.82208 0.76283 1.90591 1.14070 1.86253 1.55307 1.45705 1.08428 1.04671 1.79713 1.21016 0.96519 0.80175 0.96693 0.85454 1.23252 1.03005 1.03046 0.90088 1.22194 1.05471 1.05980 0.92091 1.22542 0.99621 0.96933 0.97784 1.22498 0.91405 1.02226 1.00604 0.92035 0.78536 0.88938 0.89065 0.89221 0.88934 0.88786 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.85 55.55 0.66 -22.45 15 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 15 3 Si 0.91 20.18 29.56 -169.99 -5.03 15.15 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 15 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 15 7 C -0.55 -15.56 9.53 -35.63 -0.34 -15.90 15 8 H 0.07 1.80 7.85 -52.48 -0.41 1.39 15 9 C 0.56 16.09 7.74 -12.99 -0.10 15.99 15 10 O -0.58 -18.99 14.61 5.20 0.08 -18.91 15 11 N -0.73 -17.09 5.56 -55.22 -0.31 -17.40 15 12 C 0.16 3.38 6.43 -67.93 -0.44 2.94 15 13 H 0.13 2.88 7.40 -51.93 -0.38 2.50 15 14 C -0.15 -2.55 10.46 -26.74 -0.28 -2.83 15 15 C -0.26 -4.23 5.60 -154.52 -0.86 -5.09 15 16 C -0.13 -1.82 10.53 -26.73 -0.28 -2.10 15 17 C -0.13 -1.84 10.53 -26.74 -0.28 -2.12 15 18 H 0.27 7.32 8.29 -40.82 -0.34 6.98 15 19 H 0.38 7.96 8.81 -40.82 -0.36 7.60 15 20 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 21 H 0.09 1.44 8.14 -51.93 -0.42 1.01 15 22 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 25 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 LS Contribution 230.43 15.07 3.47 3.47 Total: -1.00 -33.17 230.43 -6.63 -39.80 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -2.83 Total: 7.08 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.68 Total: -6.74 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.35 Total: -39.86 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.08 Total: -18.91 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -33.17 -6.63 -39.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591794844.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.746 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds