Wall clock time and date at job start Mon Mar 30 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99485 * 2 1 4 4 H 1.48498 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47045 * 300.00230 * 3 2 1 6 6 H 1.48499 * 109.46937 * 60.00072 * 3 2 1 7 7 C 1.38943 * 120.00573 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00281 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.36374 * 132.40566 * 359.71297 * 9 7 2 11 11 O 1.21292 * 134.08711 * 0.27100 * 10 9 7 12 12 C 1.51491 * 91.81558 * 180.19685 * 10 9 7 13 13 H 1.08997 * 116.36365 * 242.50865 * 12 10 9 14 14 C 1.54204 * 113.16537 * 106.46736 * 12 10 9 15 15 C 1.54868 * 104.27552 * 243.12594 * 14 12 10 16 16 C 1.54867 * 102.73839 * 38.07529 * 15 14 12 17 17 C 1.47345 * 132.30460 * 179.97438 * 9 7 2 18 18 H 1.08994 * 116.41072 * 297.48938 * 17 9 7 19 19 H 0.96993 * 120.00478 * 359.97438 * 1 2 3 20 20 H 1.08999 * 110.46948 * 124.43445 * 14 12 10 21 21 H 1.09000 * 110.58725 * 1.88076 * 14 12 10 22 22 H 1.08998 * 110.75910 * 279.76148 * 15 14 12 23 23 H 1.09001 * 110.91523 * 156.45911 * 15 14 12 24 24 H 1.09002 * 110.47438 * 80.59744 * 16 15 14 25 25 H 1.09001 * 110.47187 * 203.07296 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8891 2.3966 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0090 -1.2032 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3236 -2.3906 0.0016 10 6 -0.0082 -2.6838 0.0074 11 8 -1.0197 -2.0143 0.0092 12 6 0.2704 -4.1728 0.0085 13 1 -0.0871 -4.7328 -0.8555 14 6 -0.0076 -4.8410 1.3702 15 6 1.3751 -5.3693 1.8257 16 6 2.3383 -4.2486 1.3626 17 6 1.7717 -3.7943 0.0019 18 1 2.3477 -4.1195 -0.8644 19 1 -0.4850 0.8399 0.0004 20 1 -0.7111 -5.6653 1.2538 21 1 -0.3910 -4.1117 2.0838 22 1 1.6112 -6.3109 1.3302 23 1 1.4097 -5.4852 2.9090 24 1 2.3318 -3.4223 2.0735 25 1 3.3488 -4.6396 1.2433 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687797597.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:55 Heat of formation + Delta-G solvation = -18.776080 kcal Electronic energy + Delta-G solvation = -11086.426244 eV Core-core repulsion = 9065.278660 eV Total energy + Delta-G solvation = -2021.147585 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.57631 -37.22117 -35.51699 -33.59925 -30.05851 -28.68931 -25.57773 -23.18682 -21.46067 -20.03400 -17.86818 -17.71605 -16.80332 -16.21391 -15.86997 -15.04425 -14.45880 -14.17192 -13.56544 -13.14293 -12.89959 -12.44186 -12.39808 -12.14614 -11.96331 -11.74680 -11.63096 -11.50721 -11.20005 -9.74801 -9.58518 -7.94748 -5.78693 1.37377 1.39647 1.52947 2.28578 2.32134 2.95431 3.28353 3.56273 3.88594 4.01006 4.30792 4.43907 4.55830 4.60704 4.78877 4.90021 5.12899 5.20795 5.24760 5.30610 5.45831 5.56543 5.85004 6.72420 7.30325 7.40716 8.52221 8.93152 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.063227 B = 0.015302 C = 0.013229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.743993 B = 1829.444814 C = 2116.122659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C -0.049 4.049 3 Si 0.993 3.007 4 H -0.249 1.249 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.336 4.336 8 H 0.105 0.895 9 N -0.497 5.497 10 C 0.441 3.559 11 O -0.551 6.551 12 C -0.145 4.145 13 H 0.125 0.875 14 C -0.101 4.101 15 C -0.101 4.101 16 C -0.125 4.125 17 C 0.113 3.887 18 H 0.114 0.886 19 H 0.251 0.749 20 H 0.095 0.905 21 H 0.034 0.966 22 H 0.102 0.898 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.089 -10.524 1.989 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.250 4.250 3 Si 0.817 3.183 4 H -0.172 1.172 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.464 4.464 8 H 0.123 0.877 9 N -0.221 5.221 10 C 0.228 3.772 11 O -0.429 6.429 12 C -0.167 4.167 13 H 0.143 0.857 14 C -0.139 4.139 15 C -0.138 4.138 16 C -0.163 4.163 17 C 0.010 3.990 18 H 0.131 0.869 19 H 0.061 0.939 20 H 0.114 0.886 21 H 0.053 0.947 22 H 0.121 0.879 23 H 0.098 0.902 24 H 0.061 0.939 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.544 -9.874 1.985 11.497 hybrid contribution 0.047 1.441 -0.114 1.447 sum 5.591 -8.433 1.872 10.290 Atomic orbital electron populations 1.70880 1.06691 1.26027 1.46997 1.26517 0.96699 1.03218 0.98576 0.84878 0.78814 0.77422 0.77219 1.17212 1.21002 1.21123 1.19938 0.92352 0.83446 1.50642 0.87749 1.47111 1.06109 1.04222 1.64702 1.22454 0.83557 0.89580 0.81604 1.90534 1.33376 1.64318 1.54675 1.24309 0.96022 0.94906 1.01510 0.85704 1.22047 0.99471 0.99260 0.93168 1.22524 0.91592 0.98105 1.01628 1.22543 1.00489 0.98471 0.94816 1.23517 0.95572 0.80411 0.99472 0.86867 0.93899 0.88633 0.94720 0.87929 0.90185 0.93887 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -57.53 9.82 21.66 0.21 -57.31 15 2 C -0.05 -2.89 5.50 84.92 0.47 -2.42 15 3 Si 0.99 45.74 29.55 68.60 2.03 47.77 15 4 H -0.25 -10.34 7.11 99.48 0.71 -9.63 15 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 6 H -0.29 -13.06 7.11 99.48 0.71 -12.35 15 7 C -0.34 -19.22 10.62 84.04 0.89 -18.33 15 8 H 0.10 5.46 7.83 -2.91 -0.02 5.43 15 9 N -0.50 -26.60 3.11 -615.39 -1.91 -28.52 15 10 C 0.44 24.86 8.25 87.60 0.72 25.58 15 11 O -0.55 -36.90 14.90 -3.07 -0.05 -36.95 15 12 C -0.15 -5.62 5.01 -10.25 -0.05 -5.67 15 13 H 0.13 4.11 8.14 -2.39 -0.02 4.09 15 14 C -0.10 -3.20 6.52 31.64 0.21 -2.99 15 15 C -0.10 -2.45 6.91 31.87 0.22 -2.23 15 16 C -0.12 -3.85 6.65 31.65 0.21 -3.64 15 17 C 0.11 4.29 5.54 45.82 0.25 4.55 15 18 H 0.11 3.66 8.14 -2.39 -0.02 3.64 15 19 H 0.25 16.04 8.31 -92.71 -0.77 15.27 15 20 H 0.10 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.03 1.32 7.85 -2.39 -0.02 1.30 15 22 H 0.10 1.81 8.14 -2.39 -0.02 1.79 15 23 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.04 1.62 8.05 -2.39 -0.02 1.60 15 25 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 Total: -1.00 -79.28 214.58 4.38 -74.90 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.17 Total: 5.25 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 2.92 Total: -5.14 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.70 Total: -85.83 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.05 Total: -36.95 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -79.28 4.38 -74.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797597.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.125 kcal (2) G-P(sol) polarization free energy of solvation -79.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds