Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99673 * 2 1 4 4 H 1.48494 * 109.47141 * 270.00482 * 3 2 1 5 5 H 1.48497 * 109.46863 * 30.00509 * 3 2 1 6 6 H 1.48496 * 109.46868 * 150.00119 * 3 2 1 7 7 C 1.38810 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99674 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00005 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00116 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47315 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46958 * 179.97438 * 11 10 9 13 13 C 1.41381 * 126.57424 * 90.00101 * 12 11 10 14 14 C 1.34520 * 106.83580 * 179.72986 * 13 12 11 15 15 O 1.34302 * 108.42210 * 0.26485 * 14 13 12 16 16 C 1.34302 * 109.47622 * 359.97438 * 15 14 13 17 17 H 0.97000 * 120.00591 * 359.97438 * 1 2 3 18 18 H 0.97006 * 120.00057 * 359.97438 * 9 7 2 19 19 H 1.08995 * 109.47113 * 59.99154 * 10 9 7 20 20 H 1.09004 * 109.46789 * 299.99756 * 10 9 7 21 21 H 1.09007 * 109.47167 * 59.99706 * 11 10 9 22 22 H 1.08999 * 109.46762 * 299.99600 * 11 10 9 23 23 H 1.08002 * 126.58570 * 359.97438 * 13 12 11 24 24 H 1.08004 * 125.78733 * 180.22473 * 14 13 12 25 25 H 1.07999 * 125.79201 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4974 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6165 -2.1910 0.0000 12 6 6.3700 -3.4961 0.0006 13 6 6.7914 -4.2262 -1.1344 14 6 7.4297 -5.3194 -0.6796 15 8 7.4122 -5.2933 0.6631 16 6 6.7681 -4.1914 1.0811 17 1 -0.4851 0.8400 0.0004 18 1 3.8646 -0.3619 0.0004 19 1 3.8492 -3.0421 -0.8901 20 1 3.8486 -3.0424 0.8898 21 1 5.8798 -1.6193 0.8900 22 1 5.8797 -1.6195 -0.8900 23 1 6.6347 -3.9558 -2.1683 24 1 7.8793 -6.0882 -1.2906 25 1 6.6013 -3.9095 2.1102 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692771565.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = 22.451939 kcal Electronic energy + Delta-G solvation = -10202.449130 eV Core-core repulsion = 8183.089327 eV Total energy + Delta-G solvation = -2019.359804 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.40864 -35.73332 -33.51331 -31.45466 -29.96552 -27.87853 -23.80946 -21.48173 -21.38449 -20.06942 -17.73489 -17.00674 -15.81484 -14.77897 -14.40606 -14.15339 -13.86037 -12.80420 -12.69493 -12.34919 -12.19522 -11.45709 -11.00574 -10.91675 -10.64200 -10.14477 -9.59440 -9.42774 -8.86680 -8.39664 -7.20468 -5.74263 -3.09778 1.87722 2.74419 3.24875 3.39389 3.42238 3.46923 4.61507 4.88208 5.00475 5.21225 5.53022 5.61948 5.66299 5.88602 5.99912 6.10409 6.16393 6.26834 6.64121 6.79748 6.82580 7.23500 8.02697 8.44827 9.24147 9.96439 10.16751 11.44311 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.091916 B = 0.008088 C = 0.007842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.552887 B = 3461.284907 C = 3569.549825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.163 3.837 11 C -0.064 4.064 12 C -0.163 4.163 13 C -0.205 4.205 14 C -0.052 4.052 15 O -0.182 6.182 16 C -0.047 4.047 17 H 0.259 0.741 18 H 0.360 0.640 19 H 0.028 0.972 20 H 0.026 0.974 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.147 0.853 24 H 0.199 0.801 25 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.340 -7.306 -0.253 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.404 5.404 10 C 0.036 3.964 11 C -0.102 4.102 12 C -0.165 4.165 13 C -0.225 4.225 14 C -0.119 4.119 15 O -0.078 6.078 16 C -0.114 4.114 17 H 0.069 0.931 18 H 0.193 0.807 19 H 0.046 0.954 20 H 0.044 0.956 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.164 0.836 24 H 0.216 0.784 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 15.221 -7.607 -0.064 17.016 hybrid contribution 0.395 1.343 -0.206 1.415 sum 15.615 -6.264 -0.271 16.827 Atomic orbital electron populations 1.69702 1.05115 1.25811 1.57740 1.24678 0.95256 0.97227 1.02092 0.86520 0.79200 0.84881 0.77792 1.21053 1.21712 1.20313 1.19081 0.80654 0.94790 1.42853 0.89243 1.42740 1.04098 1.02290 1.91269 1.20584 0.87885 0.89104 0.98786 1.20234 0.95307 0.92129 1.02558 1.20493 1.03700 0.99692 0.92610 1.21807 1.03941 0.96576 1.00141 1.23942 1.05474 1.01492 0.81014 1.84033 1.60899 1.40222 1.22655 1.23887 1.00682 0.86900 0.99918 0.93069 0.80699 0.95436 0.95567 0.91185 0.91034 0.83567 0.78444 0.78228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.95 13.97 55.49 0.78 -29.17 15 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 15 3 Si 0.89 22.44 27.74 -169.99 -4.71 17.72 15 4 H -0.28 -7.12 7.11 56.52 0.40 -6.71 15 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 15 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 15 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 15 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 15 9 N -0.76 -18.77 5.41 -59.91 -0.32 -19.09 15 10 C 0.16 3.34 6.24 -4.04 -0.03 3.31 15 11 C -0.06 -1.05 5.85 -27.88 -0.16 -1.21 15 12 C -0.16 -2.39 5.42 -104.74 -0.57 -2.96 15 13 C -0.21 -2.72 10.87 -39.70 -0.43 -3.15 15 14 C -0.05 -0.60 12.09 29.42 0.36 -0.24 15 15 O -0.18 -2.37 10.65 5.71 0.06 -2.31 15 16 C -0.05 -0.62 12.01 29.42 0.35 -0.26 15 17 H 0.26 7.86 8.31 -40.82 -0.34 7.53 15 18 H 0.36 8.58 5.53 -40.82 -0.23 8.35 15 19 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.03 0.55 8.14 -51.93 -0.42 0.12 15 21 H 0.07 1.08 8.14 -51.92 -0.42 0.66 15 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.15 1.73 8.06 -52.49 -0.42 1.31 15 24 H 0.20 1.45 8.06 -52.48 -0.42 1.03 15 25 H 0.20 2.09 8.06 -52.49 -0.42 1.67 15 LS Contribution 225.58 15.07 3.40 3.40 Total: -1.00 -32.98 225.58 -4.31 -37.29 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -2.78 Total: 3.98 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.73 Total: -11.82 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.45 Total: -48.26 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: 0.06 Total: -2.31 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -32.98 -4.31 -37.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692771565.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.747 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds