Wall clock time and date at job start Mon Mar 30 2020 02:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.09003 * 115.54961 * 34.32796 * 12 10 9 14 14 C 1.53003 * 117.49363 * 248.62345 * 12 10 9 15 15 C 1.52990 * 117.49809 * 180.02562 * 12 10 9 16 16 C 1.53001 * 138.58822 * 336.58793 * 15 12 10 17 17 C 1.52994 * 138.58304 * 238.38329 * 15 12 10 18 18 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 19 19 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 20 20 H 1.08993 * 117.50530 * 359.97438 * 14 12 10 21 21 H 1.09005 * 117.49387 * 145.02697 * 14 12 10 22 22 H 1.09003 * 117.49724 * 336.60003 * 16 15 12 23 23 H 1.08995 * 117.49705 * 121.62375 * 16 15 12 24 24 H 1.09008 * 117.49680 * 238.37843 * 17 15 12 25 25 H 1.09001 * 117.50609 * 23.39802 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 1 6.0283 -1.5570 0.5739 14 6 6.2728 -2.8687 -1.2400 15 6 6.2670 -3.7277 0.0256 16 6 5.9712 -5.1734 0.4296 17 6 7.2635 -4.4985 0.8937 18 1 -0.4850 0.8401 -0.0004 19 1 3.8648 -0.3633 0.0059 20 1 5.6514 -3.1967 -2.0732 21 1 7.2092 -2.3827 -1.5141 22 1 5.1937 -5.3385 1.1755 23 1 6.0522 -5.9383 -0.3426 24 1 8.1947 -4.8195 0.4268 25 1 7.3362 -4.2196 1.9450 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707842865.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:01 Heat of formation + Delta-G solvation = -0.459860 kcal Electronic energy + Delta-G solvation = -10442.902905 eV Core-core repulsion = 8422.549571 eV Total energy + Delta-G solvation = -2020.353334 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.65183 -38.35547 -35.99022 -33.87491 -33.30227 -27.57454 -24.25726 -23.23337 -21.38060 -20.76114 -19.43829 -17.84999 -16.84638 -16.00364 -15.86776 -15.60421 -15.09972 -14.79313 -14.29028 -13.37583 -13.04117 -12.57372 -12.45252 -12.31695 -11.99700 -11.56280 -11.07334 -10.93726 -10.84983 -10.40460 -10.28851 -8.45346 -6.06570 1.28634 1.32915 1.43211 1.77990 2.20593 2.56685 2.78495 3.14144 3.17464 3.47209 3.94438 4.02580 4.30217 4.58980 4.70488 4.78069 4.80984 4.85778 5.05426 5.11219 5.31836 5.52195 5.90347 6.54880 6.82690 7.35499 7.92302 8.72360 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.074002 B = 0.010689 C = 0.009808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.276941 B = 2618.806576 C = 2854.064854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.966 3.034 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.234 1.234 7 C -0.334 4.334 8 H 0.054 0.946 9 N -0.585 5.585 10 C 0.472 3.528 11 O -0.623 6.623 12 C -0.144 4.144 13 H 0.145 0.855 14 C -0.086 4.086 15 C -0.227 4.227 16 C -0.140 4.140 17 C -0.093 4.093 18 H 0.281 0.719 19 H 0.391 0.609 20 H 0.081 0.919 21 H 0.143 0.857 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.127 0.873 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.059 0.260 -0.164 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.212 4.212 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.157 1.157 7 C -0.463 4.463 8 H 0.072 0.928 9 N -0.225 5.225 10 C 0.260 3.740 11 O -0.509 6.509 12 C -0.165 4.165 13 H 0.162 0.838 14 C -0.123 4.123 15 C -0.227 4.227 16 C -0.177 4.177 17 C -0.129 4.129 18 H 0.090 0.910 19 H 0.226 0.774 20 H 0.100 0.900 21 H 0.161 0.839 22 H 0.089 0.911 23 H 0.120 0.880 24 H 0.145 0.855 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.435 -0.325 -0.158 16.439 hybrid contribution -0.730 0.803 0.065 1.087 sum 15.705 0.478 -0.093 15.713 Atomic orbital electron populations 1.69802 1.08140 1.29421 1.49880 1.26139 0.96502 1.02758 0.95768 0.85345 0.79399 0.76537 0.80143 1.17859 1.19643 1.15693 1.19044 0.81453 0.95041 1.50806 0.92804 1.42002 1.05787 1.07516 1.67169 1.20159 0.89570 0.83224 0.81012 1.90516 1.71364 1.33000 1.55986 1.21908 0.89209 0.99161 1.06242 0.83788 1.22740 1.01621 0.98881 0.89054 1.21414 1.06743 0.91552 1.03009 1.22561 0.99576 0.92758 1.02788 1.22861 0.93242 0.97933 0.98895 0.90967 0.77364 0.90024 0.83875 0.91117 0.87959 0.85460 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.96 21.66 0.30 -56.74 15 2 C -0.01 -0.72 5.50 84.93 0.47 -0.26 15 3 Si 0.97 39.59 27.74 68.60 1.90 41.49 15 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 15 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 6 H -0.23 -8.18 6.51 99.48 0.65 -7.53 15 7 C -0.33 -20.31 10.16 84.04 0.85 -19.45 15 8 H 0.05 3.88 7.39 -2.91 -0.02 3.85 15 9 N -0.58 -29.22 5.09 -306.97 -1.56 -30.78 15 10 C 0.47 22.99 7.57 87.66 0.66 23.66 15 11 O -0.62 -36.62 15.82 -3.07 -0.05 -36.66 15 12 C -0.14 -4.93 6.19 -11.54 -0.07 -5.01 15 13 H 0.14 3.92 8.14 -2.39 -0.02 3.90 15 14 C -0.09 -2.37 10.23 30.58 0.31 -2.06 15 15 C -0.23 -6.91 5.05 -52.20 -0.26 -7.17 15 16 C -0.14 -4.26 10.16 30.60 0.31 -3.95 15 17 C -0.09 -2.06 10.53 30.59 0.32 -1.74 15 18 H 0.28 15.61 8.31 -92.70 -0.77 14.84 15 19 H 0.39 16.24 5.76 -92.71 -0.53 15.71 15 20 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 21 H 0.14 2.67 8.14 -2.38 -0.02 2.65 15 22 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.10 2.80 8.14 -2.39 -0.02 2.79 15 24 H 0.13 2.01 8.14 -2.38 -0.02 1.99 15 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -76.46 227.18 3.79 -72.67 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.60 Total: 26.00 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 2.60 Total: -15.97 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -1.26 Total: -87.53 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.05 Total: -36.66 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.90 Total: 41.49 kcal Total: -76.46 3.79 -72.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707842865.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.214 kcal (2) G-P(sol) polarization free energy of solvation -76.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds