Wall clock time and date at job start Mon Mar 30 2020 02:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09002 * 109.70409 * 92.03204 * 3 2 1 5 5 C 1.53290 * 109.68059 * 212.57107 * 3 2 1 6 6 O 1.42959 * 109.22288 * 67.42378 * 5 3 2 7 7 C 1.43045 * 114.18723 * 62.58205 * 6 5 3 8 8 C 1.53291 * 109.17713 * 297.43811 * 7 6 5 9 9 N 1.47150 * 108.41761 * 52.28963 * 8 7 6 10 10 C 1.36938 * 120.98449 * 129.46718 * 9 8 7 11 11 H 1.08000 * 119.99414 * 206.24138 * 10 9 8 12 12 C 1.38808 * 119.99845 * 26.24318 * 10 9 8 13 13 N 1.31621 * 120.00268 * 16.90512 * 12 10 9 14 14 Si 1.86801 * 119.99598 * 196.91014 * 12 10 9 15 15 H 1.48500 * 109.47422 * 59.99642 * 14 12 10 16 16 H 1.48506 * 109.46991 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47064 * 299.99489 * 14 12 10 18 18 H 4.19114 * 14.98177 * 0.02562 * 4 2 1 19 19 H 1.09000 * 109.50824 * 187.34297 * 5 3 2 20 20 H 1.08993 * 109.51753 * 307.44586 * 5 3 2 21 21 H 1.09005 * 109.56397 * 177.51059 * 7 6 5 22 22 H 1.09007 * 109.50568 * 57.33031 * 7 6 5 23 23 H 1.08999 * 109.68229 * 292.53887 * 8 7 6 24 24 H 1.09004 * 109.68061 * 172.03241 * 8 7 6 25 25 H 0.97003 * 119.99665 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0135 0.0372 -1.0256 5 6 3.1617 1.2172 0.7770 6 8 2.8324 1.0666 2.1600 7 6 3.4423 -0.0647 2.7879 8 6 2.9407 -1.3464 2.1130 9 7 3.1422 -1.2168 0.6611 10 6 3.7724 -2.2002 -0.0536 11 1 4.2870 -1.9554 -0.9710 12 6 3.7496 -3.5116 0.4009 13 7 2.8703 -3.8782 1.3091 14 14 4.9672 -4.7559 -0.2762 15 1 6.3514 -4.3008 0.0105 16 1 4.7370 -6.0744 0.3672 17 1 4.7816 -4.8819 -1.7441 18 1 -1.0500 0.0005 0.0001 19 1 4.2438 1.2880 0.6661 20 1 2.6959 2.1223 0.3875 21 1 3.1774 -0.0822 3.8451 22 1 4.5254 0.0015 2.6842 23 1 1.8804 -1.4825 2.3258 24 1 3.5028 -2.2022 2.4867 25 1 2.8547 -4.7945 1.6269 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839196602.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:13 Heat of formation + Delta-G solvation = 15.560266 kcal Electronic energy + Delta-G solvation = -11013.137077 eV Core-core repulsion = 8993.478428 eV Total energy + Delta-G solvation = -2019.658649 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.11076 -36.43345 -34.57806 -32.68851 -31.42175 -28.72157 -25.33056 -24.96943 -22.18515 -19.18993 -18.51791 -17.26132 -16.74338 -16.26071 -15.92789 -15.64012 -15.22407 -14.62233 -13.58005 -13.08500 -12.93689 -12.71245 -12.45980 -12.17291 -12.09084 -11.52458 -11.28311 -11.05309 -10.69637 -10.45465 -8.86596 -7.94179 -5.44213 1.46460 1.48621 1.55880 1.97301 2.07684 2.50180 3.03037 3.20545 3.58838 3.72091 4.18692 4.38910 4.55716 4.62257 4.63828 4.72488 4.97641 5.11204 5.30381 5.52530 5.58032 6.24047 6.32198 6.89529 7.01447 7.68069 8.22849 9.11185 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.049902 B = 0.015181 C = 0.013954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.969661 B = 1843.958799 C = 2006.173395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.203 4.203 3 C 0.217 3.783 4 H 0.097 0.903 5 C 0.068 3.932 6 O -0.399 6.399 7 C 0.049 3.951 8 C 0.147 3.853 9 N -0.596 5.596 10 C -0.273 4.273 11 H 0.078 0.922 12 C -0.048 4.048 13 N -0.935 5.935 14 Si 0.977 3.023 15 H -0.272 1.272 16 H -0.294 1.294 17 H -0.275 1.275 18 H 0.241 0.759 19 H 0.069 0.931 20 H 0.114 0.886 21 H 0.105 0.895 22 H 0.055 0.945 23 H -0.007 1.007 24 H 0.070 0.930 25 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 7.209 -0.436 7.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.205 4.205 3 C 0.110 3.890 4 H 0.115 0.885 5 C -0.010 4.010 6 O -0.317 6.317 7 C -0.029 4.029 8 C 0.021 3.979 9 N -0.318 5.318 10 C -0.403 4.403 11 H 0.096 0.904 12 C -0.244 4.244 13 N -0.580 5.580 14 Si 0.804 3.196 15 H -0.197 1.197 16 H -0.220 1.220 17 H -0.201 1.201 18 H 0.257 0.743 19 H 0.087 0.913 20 H 0.132 0.868 21 H 0.123 0.877 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.088 0.912 25 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.362 7.156 -0.266 7.289 hybrid contribution 0.084 -1.323 -0.383 1.380 sum 1.446 5.833 -0.648 6.044 Atomic orbital electron populations 1.25570 0.96750 1.01538 1.01758 1.24970 0.96473 0.99555 0.99539 1.18804 0.82812 0.89417 0.97954 0.88494 1.22989 1.00011 0.96753 0.81242 1.87803 1.72969 1.47105 1.23859 1.23213 0.96820 0.85732 0.97100 1.21279 0.96717 0.96268 0.83595 1.44535 1.65366 1.18638 1.03257 1.19619 1.25390 0.87328 1.07943 0.90397 1.25941 0.99616 0.98750 1.00082 1.70215 1.35578 1.17611 1.34568 0.85212 0.79034 0.77453 0.77941 1.19724 1.22035 1.20076 0.74277 0.91261 0.86774 0.87682 0.92666 0.98909 0.91184 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.36 19.25 74.32 1.43 -7.93 15 2 C -0.20 -8.98 12.33 31.12 0.38 -8.60 15 3 C 0.22 9.36 3.18 43.16 0.14 9.50 15 4 H 0.10 3.94 7.96 -2.39 -0.02 3.92 15 5 C 0.07 2.41 6.33 72.08 0.46 2.86 15 6 O -0.40 -15.79 10.54 -148.98 -1.57 -17.36 15 7 C 0.05 1.94 6.99 72.08 0.50 2.45 15 8 C 0.15 7.37 5.13 86.35 0.44 7.82 15 9 N -0.60 -30.60 2.72 -683.81 -1.86 -32.45 15 10 C -0.27 -14.99 9.65 84.03 0.81 -14.18 15 11 H 0.08 4.06 7.88 -2.91 -0.02 4.03 15 12 C -0.05 -2.67 4.95 84.86 0.42 -2.25 15 13 N -0.93 -55.62 11.14 21.65 0.24 -55.38 15 14 Si 0.98 44.21 29.59 68.60 2.03 46.24 15 15 H -0.27 -11.75 7.11 99.48 0.71 -11.05 15 16 H -0.29 -13.43 7.11 99.48 0.71 -12.72 15 17 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 18 H 0.24 7.06 7.80 -4.42 -0.03 7.03 15 19 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 20 H 0.11 3.34 8.13 -2.39 -0.02 3.32 15 21 H 0.11 3.60 8.14 -2.38 -0.02 3.58 15 22 H 0.06 2.06 8.14 -2.38 -0.02 2.04 15 23 H -0.01 -0.41 8.08 -2.39 -0.02 -0.43 15 24 H 0.07 3.83 6.14 -2.38 -0.01 3.81 15 25 H 0.25 14.51 8.31 -92.71 -0.77 13.74 15 Total: -1.00 -65.71 221.85 4.59 -61.12 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.16 Total: 8.16 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.59 Total: -10.32 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.62 Total: -87.84 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.57 Total: -17.36 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.71 4.59 -61.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839196602.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.677 kcal (2) G-P(sol) polarization free energy of solvation -65.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds