Wall clock time and date at job start Mon Mar 30 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47034 * 90.00599 * 5 4 3 7 7 H 1.08000 * 119.99961 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99987 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00299 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99852 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47274 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47124 * 119.99861 * 10 8 6 13 13 H 1.48504 * 109.46925 * 239.99749 * 10 8 6 14 14 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 15 15 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 16 16 C 1.50706 * 126.43925 * 359.97438 * 15 2 1 17 17 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 18 18 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 19 19 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 20 20 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 21 21 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 22 22 H 0.96999 * 120.00472 * 180.02562 * 9 8 6 23 23 H 1.09001 * 109.46953 * 90.00182 * 16 15 2 24 24 H 1.09000 * 109.47318 * 209.99779 * 16 15 2 25 25 H 1.09000 * 109.47161 * 330.00410 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 6 5.1493 1.9027 1.4209 7 1 4.5878 1.4819 2.2419 8 6 6.2333 2.7167 1.6725 9 7 6.9167 3.2294 0.6728 10 14 6.7303 3.0923 3.4336 11 1 5.8057 2.4005 4.3673 12 1 8.1178 2.6181 3.6682 13 1 6.6622 4.5576 3.6653 14 8 3.5735 -0.6445 0.0067 15 6 2.2998 -1.0844 -0.0005 16 6 1.8494 -2.5226 -0.0006 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 0.8900 -0.5138 19 1 -0.3633 -0.8900 -0.5139 20 1 5.5731 1.1064 -0.5131 21 1 4.5040 2.5295 -0.5143 22 1 7.6796 3.8018 0.8498 23 1 1.7405 -2.8691 -1.0283 24 1 2.5903 -3.1354 0.5128 25 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535715698.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:31 Heat of formation + Delta-G solvation = -0.453205 kcal Electronic energy + Delta-G solvation = -10445.877308 eV Core-core repulsion = 8425.524263 eV Total energy + Delta-G solvation = -2020.353045 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.48542 -34.41020 -33.71501 -32.28596 -29.38648 -28.58636 -24.95260 -22.94003 -20.77751 -19.73862 -16.71088 -15.80183 -15.61894 -14.64608 -13.77761 -13.48361 -12.99976 -12.82872 -12.50254 -12.18199 -12.12209 -11.76098 -11.37578 -10.87313 -10.75346 -10.22730 -10.02430 -9.62612 -9.51634 -8.53879 -7.72475 -6.15583 -4.20198 2.21541 3.27297 3.33712 3.38527 3.51288 3.55064 4.38482 4.93283 5.20287 5.22643 5.35623 5.54541 5.59518 5.83082 5.86505 6.03028 6.08005 6.70794 6.76631 7.08877 7.32008 7.32814 7.79006 8.07267 8.70269 8.80793 9.43585 10.94681 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.065934 B = 0.009889 C = 0.009864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.565803 B = 2830.721907 C = 2837.818785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.019 4.019 3 N -0.508 5.508 4 C 0.251 3.749 5 C 0.104 3.896 6 C -0.518 4.518 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.891 5.891 10 Si 0.905 3.095 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.281 1.281 14 O -0.205 6.205 15 C -0.097 4.097 16 C -0.056 4.056 17 H 0.067 0.933 18 H 0.071 0.929 19 H 0.066 0.934 20 H 0.049 0.951 21 H 0.065 0.935 22 H 0.265 0.735 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -8.118 -0.980 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 N -0.237 5.237 4 C 0.045 3.955 5 C 0.066 3.934 6 C -0.557 4.557 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.529 5.529 10 Si 0.732 3.268 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.207 1.207 14 O -0.093 6.093 15 C -0.150 4.150 16 C -0.113 4.113 17 H 0.086 0.914 18 H 0.090 0.910 19 H 0.085 0.915 20 H 0.067 0.933 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.446 -7.396 -1.025 11.273 hybrid contribution 0.548 -0.411 0.939 1.163 sum -7.898 -7.808 -0.086 11.106 Atomic orbital electron populations 1.20004 0.87606 1.02444 1.02103 1.21476 0.97442 0.88576 1.06356 1.70435 1.00983 1.30452 1.21805 1.27710 0.96355 0.78099 0.93329 1.18060 0.84660 0.91000 0.99657 1.20919 1.13486 1.30699 0.90585 0.92162 1.24949 0.95803 0.95271 0.97948 1.69940 1.19472 1.32675 1.30860 0.86320 0.78362 0.78217 0.83897 1.19639 1.20722 1.20659 1.84428 1.29262 1.25386 1.70259 1.22879 0.81988 0.97633 1.12491 1.20060 1.01197 0.87384 1.02651 0.91387 0.91048 0.91505 0.93308 0.91686 0.92487 0.90860 0.90965 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.05 36.00 0.36 -0.55 15 2 C -0.02 -0.37 7.11 -82.81 -0.59 -0.96 15 3 N -0.51 -12.22 11.29 -7.36 -0.08 -12.30 15 4 C 0.25 6.26 7.53 -12.94 -0.10 6.16 15 5 C 0.10 2.79 5.60 -29.04 -0.16 2.63 15 6 C -0.52 -14.92 9.09 -34.44 -0.31 -15.24 15 7 H 0.06 1.76 7.74 -52.49 -0.41 1.35 15 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 9 N -0.89 -26.00 13.29 55.43 0.74 -25.26 15 10 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 15 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 14 O -0.20 -4.71 10.78 5.36 0.06 -4.65 15 15 C -0.10 -1.84 7.39 -35.68 -0.26 -2.11 15 16 C -0.06 -0.71 10.04 36.01 0.36 -0.35 15 17 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 18 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 19 H 0.07 0.74 7.79 -51.93 -0.40 0.34 15 20 H 0.05 1.31 8.14 -51.93 -0.42 0.89 15 21 H 0.07 1.80 8.14 -51.93 -0.42 1.38 15 22 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 15 25 H 0.08 0.84 7.80 -51.93 -0.40 0.43 15 LS Contribution 228.97 15.07 3.45 3.45 Total: -1.00 -31.63 228.97 -4.55 -36.18 By element: Atomic # 1 Polarization: -2.41 SS G_CDS: -2.89 Total: -5.30 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -0.80 Total: -8.74 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.65 Total: -37.56 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: 0.06 Total: -4.65 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.63 -4.55 -36.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535715698.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.724 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds