Wall clock time and date at job start Mon Mar 30 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36343 * 125.63847 * 2 1 4 4 C 1.34851 * 108.22295 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41480 * 0.02562 * 4 3 2 6 6 C 1.34858 * 107.41686 * 359.73710 * 5 4 3 7 7 C 1.50694 * 125.88994 * 180.25251 * 6 5 4 8 8 H 1.08998 * 109.47369 * 205.19705 * 7 6 5 9 9 O 1.42899 * 109.47209 * 325.20108 * 7 6 5 10 10 C 1.50704 * 109.47336 * 85.20137 * 7 6 5 11 11 H 1.08009 * 119.99563 * 359.97438 * 10 7 6 12 12 C 1.37869 * 120.00362 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00512 * 179.97438 * 12 10 7 14 14 Si 1.86802 * 120.00042 * 359.97438 * 12 10 7 15 15 H 1.48497 * 109.47007 * 90.00038 * 14 12 10 16 16 H 1.48496 * 109.47205 * 210.00240 * 14 12 10 17 17 H 1.48505 * 109.46976 * 329.99953 * 14 12 10 18 18 H 1.09002 * 109.47391 * 90.02039 * 1 2 3 19 19 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 20 20 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 21 21 H 1.08001 * 125.88585 * 359.97438 * 3 2 1 22 22 H 1.07993 * 126.29100 * 180.02562 * 4 3 2 23 23 H 1.08001 * 126.29295 * 179.97438 * 5 4 3 24 24 H 0.96695 * 114.00467 * 60.00547 * 9 7 6 25 25 H 0.96995 * 120.00774 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 3.5461 -0.7045 -0.0015 6 6 2.2594 -1.1081 0.0044 7 6 1.7819 -2.5374 0.0111 8 1 0.7833 -2.5889 -0.4227 9 8 2.6776 -3.3424 -0.7581 10 6 1.7404 -3.0466 1.4289 11 1 2.0312 -2.3999 2.2436 12 6 1.3323 -4.3381 1.6859 13 7 1.2965 -4.7827 2.9231 14 14 0.8300 -5.4569 0.2767 15 1 2.0199 -6.1953 -0.2172 16 1 -0.1908 -6.4246 0.7527 17 1 0.2616 -4.6399 -0.8255 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5135 20 1 -0.3633 -0.8898 0.5142 21 1 1.9172 2.1324 -0.0004 22 1 4.4165 1.3437 -0.0003 23 1 4.4166 -1.3437 -0.0026 24 1 3.5867 -3.3439 -0.4287 25 1 1.0098 -5.6915 3.1039 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535846280.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:19 Heat of formation + Delta-G solvation = -23.681934 kcal Electronic energy + Delta-G solvation = -10846.567796 eV Core-core repulsion = 8825.207478 eV Total energy + Delta-G solvation = -2021.360318 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.97050 -37.79557 -34.53333 -33.56458 -31.11174 -28.26494 -27.09573 -24.31253 -21.28153 -20.16784 -19.48078 -18.11015 -16.96219 -15.92363 -15.81428 -15.63093 -14.97064 -14.20811 -13.98064 -13.66760 -13.32034 -13.00218 -12.91613 -12.81270 -12.67627 -11.86784 -11.41501 -10.91880 -10.74734 -9.38170 -8.74947 -8.39784 -6.57011 1.38531 1.42397 1.48704 1.56557 2.23644 2.25561 2.34155 2.93687 3.93756 4.09831 4.16804 4.39532 4.46310 4.68934 4.73320 4.82831 5.05620 5.33671 5.51230 5.57066 6.03317 6.26037 6.43909 6.55168 6.69746 7.01747 7.22671 8.74010 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.055788 B = 0.014277 C = 0.013819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.779304 B = 1960.742964 C = 2025.667311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.453 5.453 3 C -0.026 4.026 4 C -0.220 4.220 5 C -0.227 4.227 6 C 0.000 4.000 7 C 0.265 3.735 8 H 0.060 0.940 9 O -0.579 6.579 10 C -0.552 4.552 11 H 0.032 0.968 12 C 0.034 3.966 13 N -0.932 5.932 14 Si 0.975 3.025 15 H -0.273 1.273 16 H -0.296 1.296 17 H -0.261 1.261 18 H 0.086 0.914 19 H 0.110 0.890 20 H 0.068 0.932 21 H 0.196 0.804 22 H 0.152 0.848 23 H 0.128 0.872 24 H 0.377 0.623 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 8.851 -7.362 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.130 5.130 3 C -0.155 4.155 4 C -0.244 4.244 5 C -0.252 4.252 6 C -0.113 4.113 7 C 0.206 3.794 8 H 0.078 0.922 9 O -0.386 6.386 10 C -0.590 4.590 11 H 0.050 0.950 12 C -0.167 4.167 13 N -0.571 5.571 14 Si 0.801 3.199 15 H -0.198 1.198 16 H -0.224 1.224 17 H -0.186 1.186 18 H 0.105 0.895 19 H 0.128 0.872 20 H 0.087 0.913 21 H 0.213 0.787 22 H 0.170 0.830 23 H 0.146 0.854 24 H 0.226 0.774 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.070 8.611 -7.600 11.671 hybrid contribution 0.400 -0.618 0.371 0.825 sum -1.670 7.993 -7.230 10.906 Atomic orbital electron populations 1.22202 0.76238 1.05060 1.04050 1.44113 1.07219 1.05437 1.56245 1.22309 0.90287 0.92192 1.10743 1.21091 0.97171 0.94219 1.11923 1.20753 0.95246 0.96266 1.12906 1.21376 0.91710 0.90166 1.08022 1.18028 0.89569 0.82190 0.89604 0.92209 1.86308 1.23676 1.70592 1.58020 1.21556 1.46676 0.98483 0.92281 0.94988 1.25826 0.93397 0.99402 0.98073 1.70054 1.47573 1.18143 1.21333 0.85289 0.77922 0.77883 0.78781 1.19811 1.22363 1.18585 0.89517 0.87199 0.91291 0.78695 0.82989 0.85363 0.77410 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 10.71 127.77 1.37 3.23 15 2 N -0.45 -16.62 3.15 -533.24 -1.68 -18.30 15 3 C -0.03 -0.83 11.43 83.21 0.95 0.12 15 4 C -0.22 -7.57 10.86 22.14 0.24 -7.33 15 5 C -0.23 -9.36 10.20 22.14 0.23 -9.13 15 6 C 0.00 0.00 5.90 41.08 0.24 0.25 15 7 C 0.26 12.86 2.38 29.10 0.07 12.93 15 8 H 0.06 2.91 6.52 -2.39 -0.02 2.90 15 9 O -0.58 -26.86 10.90 -148.98 -1.62 -28.48 15 10 C -0.55 -31.69 9.33 25.60 0.24 -31.45 15 11 H 0.03 2.07 7.98 -2.91 -0.02 2.05 15 12 C 0.03 1.95 5.47 84.65 0.46 2.42 15 13 N -0.93 -57.42 13.96 21.44 0.30 -57.12 15 14 Si 0.97 47.02 26.18 68.60 1.80 48.82 15 15 H -0.27 -12.96 7.11 99.48 0.71 -12.25 15 16 H -0.30 -13.84 7.11 99.48 0.71 -13.13 15 17 H -0.26 -12.19 6.54 99.48 0.65 -11.54 15 18 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 19 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 20 H 0.07 2.28 7.51 -2.38 -0.02 2.26 15 21 H 0.20 4.27 8.06 -2.91 -0.02 4.25 15 22 H 0.15 4.28 8.06 -2.91 -0.02 4.25 15 23 H 0.13 5.02 7.56 -2.91 -0.02 5.00 15 24 H 0.38 15.68 8.17 -74.06 -0.60 15.07 15 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 15 Total: -1.00 -69.18 219.67 3.12 -66.06 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.52 Total: 17.98 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 3.80 Total: -28.96 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.38 Total: -75.42 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.62 Total: -28.48 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.80 Total: 48.82 kcal Total: -69.18 3.12 -66.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535846280.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.378 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds