Wall clock time and date at job start Mon Mar 30 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31339 * 1 3 3 Si 1.86805 * 119.99700 * 2 1 4 4 H 1.48503 * 109.46837 * 269.99812 * 3 2 1 5 5 H 1.48500 * 109.47066 * 29.99543 * 3 2 1 6 6 H 1.48501 * 109.46750 * 149.99988 * 3 2 1 7 7 C 1.39092 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00430 * 0.02562 * 7 2 1 9 9 N 1.36752 * 120.00200 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00178 * 180.02562 * 9 7 2 11 11 O 1.21663 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.47223 * 120.00115 * 180.02562 * 10 9 7 13 13 N 1.31697 * 125.85558 * 359.97438 * 12 10 9 14 14 C 1.33087 * 109.21526 * 180.02562 * 13 12 10 15 15 C 1.35583 * 108.40494 * 359.73760 * 14 13 12 16 16 N 1.36023 * 107.07764 * 0.42376 * 15 14 13 17 17 H 0.97001 * 126.49471 * 179.85180 * 16 15 14 18 18 H 0.97003 * 119.99863 * 0.02562 * 1 2 3 19 19 H 0.96998 * 119.99894 * 359.97438 * 9 7 2 20 20 H 1.08005 * 125.79872 * 180.02562 * 14 13 12 21 21 H 1.07995 * 126.46216 * 180.28838 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.4948 2.0465 -1.4001 5 1 1.4447 2.6527 0.6999 6 1 3.5449 1.4402 0.7001 7 6 2.0089 -1.2046 0.0005 8 1 1.4690 -2.1399 0.0005 9 7 3.3764 -1.2046 0.0011 10 6 4.0503 -2.3717 0.0011 11 8 3.4420 -3.4254 0.0011 12 6 5.5225 -2.3717 0.0022 13 7 6.2939 -1.3043 0.0028 14 6 7.5691 -1.6854 0.0032 15 6 7.6108 -3.0406 0.0088 16 7 6.3235 -3.4799 0.0021 17 1 6.0294 -4.4043 0.0018 18 1 -0.4850 0.8401 -0.0004 19 1 3.8614 -0.3645 0.0007 20 1 8.4252 -1.0270 0.0041 21 1 8.4987 -3.6553 0.0149 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236403.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:51 Heat of formation + Delta-G solvation = -3.937807 kcal Electronic energy + Delta-G solvation = -10290.027638 eV Core-core repulsion = 8165.983146 eV Total energy + Delta-G solvation = -2124.044492 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.99083 -39.98691 -36.24656 -34.07915 -33.39715 -30.75552 -27.27580 -24.01520 -22.36966 -21.31966 -20.87097 -19.02484 -17.46230 -16.76692 -16.46654 -15.60846 -14.97631 -14.87501 -14.74813 -14.47221 -14.24238 -13.06854 -12.50533 -12.04350 -11.66908 -11.24653 -11.23436 -10.97037 -10.40585 -9.48205 -8.54750 -6.12197 0.47176 1.31288 1.34041 1.42997 1.78063 1.91303 2.15892 2.42942 2.99011 3.12621 3.59316 4.22220 4.42649 4.54735 5.07621 5.39491 5.70803 5.80803 6.27664 6.39915 6.65328 6.94200 7.23118 7.69811 8.60697 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.064327 B = 0.012897 C = 0.010784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.173268 B = 2170.474990 C = 2595.805325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.245 1.245 7 C -0.335 4.335 8 H 0.071 0.929 9 N -0.549 5.549 10 C 0.516 3.484 11 O -0.624 6.624 12 C 0.134 3.866 13 N -0.485 5.485 14 C -0.052 4.052 15 C -0.005 4.005 16 N -0.524 5.524 17 H 0.436 0.564 18 H 0.287 0.713 19 H 0.395 0.605 20 H 0.208 0.792 21 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.695 -0.525 0.025 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.199 4.199 3 Si 0.773 3.227 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.169 1.169 7 C -0.465 4.465 8 H 0.089 0.911 9 N -0.186 5.186 10 C 0.303 3.697 11 O -0.511 6.511 12 C -0.126 4.126 13 N -0.209 5.209 14 C -0.204 4.204 15 C -0.144 4.144 16 N -0.127 5.127 17 H 0.276 0.724 18 H 0.097 0.903 19 H 0.231 0.769 20 H 0.225 0.775 21 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 15.724 -0.276 0.024 15.726 hybrid contribution -0.005 -0.402 0.003 0.402 sum 15.719 -0.678 0.026 15.733 Atomic orbital electron populations 1.69713 1.07743 1.29920 1.47361 1.26016 0.96436 1.02300 0.95146 0.85520 0.79364 0.77404 0.80457 1.17753 1.18431 1.16859 1.19113 0.80408 0.95837 1.51118 0.91081 1.41680 1.06279 1.07277 1.63400 1.16538 0.84125 0.84247 0.84780 1.90646 1.69728 1.31963 1.58803 1.22279 0.92744 0.83816 1.13802 1.70168 1.04551 1.28755 1.17412 1.23170 0.94093 0.94514 1.08605 1.23918 0.87228 0.97202 1.06066 1.43200 1.06858 1.10100 1.52514 0.72372 0.90345 0.76896 0.77484 0.74465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.03 13.95 21.69 0.30 -53.72 14 2 C 0.00 0.19 5.50 84.97 0.47 0.66 14 3 Si 0.95 40.97 27.74 68.60 1.90 42.87 14 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 14 5 H -0.26 -10.58 7.11 99.48 0.71 -9.87 14 6 H -0.24 -9.87 6.52 99.48 0.65 -9.22 14 7 C -0.34 -20.28 10.16 84.13 0.85 -19.42 14 8 H 0.07 4.93 7.38 -2.91 -0.02 4.91 14 9 N -0.55 -29.10 5.08 -310.19 -1.57 -30.68 14 10 C 0.52 26.42 7.76 86.60 0.67 27.09 14 11 O -0.62 -35.81 16.66 -4.23 -0.07 -35.88 14 12 C 0.13 5.38 7.95 136.18 1.08 6.46 14 13 N -0.49 -17.90 10.88 -189.59 -2.06 -19.96 14 14 C -0.05 -1.31 11.85 83.89 0.99 -0.32 14 15 C -0.01 -0.11 12.03 83.43 1.00 0.90 14 16 N -0.52 -15.18 6.18 -187.62 -1.16 -16.34 14 17 H 0.44 10.94 8.96 -92.71 -0.83 10.11 14 18 H 0.29 15.40 8.31 -92.71 -0.77 14.63 14 19 H 0.39 19.00 5.44 -92.71 -0.50 18.50 14 20 H 0.21 3.52 8.06 -2.91 -0.02 3.49 14 21 H 0.24 1.89 8.06 -2.91 -0.02 1.86 14 Total: -1.00 -75.88 202.67 2.30 -73.58 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.11 Total: 24.76 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.07 Total: 15.37 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -4.50 Total: -120.70 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.07 Total: -35.88 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.90 Total: 42.87 kcal Total: -75.88 2.30 -73.58 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236403.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.647 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds