Wall clock time and date at job start Mon Mar 30 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31316 * 1 3 3 Si 1.86792 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47093 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47137 * 120.00048 * 3 2 1 6 6 H 1.48494 * 109.47521 * 240.00299 * 3 2 1 7 7 C 1.39004 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00356 * 153.70264 * 7 2 1 9 9 N 1.37144 * 119.99981 * 333.69946 * 7 2 1 10 10 C 1.37043 * 119.69933 * 332.71017 * 9 7 2 11 11 C 1.35054 * 119.65911 * 179.76627 * 10 9 7 12 12 C 1.41701 * 119.09318 * 0.47667 * 11 10 9 13 13 O 1.21775 * 120.30198 * 179.74850 * 12 11 10 14 14 N 1.34833 * 119.39222 * 359.77382 * 12 11 10 15 15 H 0.97006 * 119.84852 * 180.02562 * 14 12 11 16 16 C 1.34541 * 119.69999 * 152.98274 * 9 7 2 17 17 O 1.21570 * 119.51937 * 359.97438 * 16 9 7 18 18 H 0.96996 * 120.00210 * 174.39818 * 1 2 3 19 19 H 1.08003 * 120.16882 * 0.02562 * 10 9 7 20 20 H 1.07999 * 120.45488 * 180.22801 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6176 0.0000 4 1 1.2823 2.7464 0.0006 5 1 3.1010 1.6962 1.2125 6 1 3.1009 1.6964 -1.2125 7 6 2.0081 -1.2038 -0.0005 8 1 3.0043 -1.2522 -0.4149 9 7 1.4288 -2.3303 0.5252 10 6 0.4827 -2.2110 1.5095 11 6 -0.0906 -3.3206 2.0233 12 6 0.3086 -4.5905 1.5375 13 8 -0.1907 -5.6055 1.9884 14 7 1.2466 -4.6645 0.5718 15 1 1.5246 -5.5304 0.2341 16 6 1.7985 -3.5426 0.0739 17 8 2.6430 -3.6258 -0.7967 18 1 -0.4850 -0.8360 -0.0820 19 1 0.1941 -1.2345 1.8694 20 1 -0.8402 -3.2414 2.7967 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026515441.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:55 Heat of formation + Delta-G solvation = -45.733966 kcal Electronic energy + Delta-G solvation = -10805.935941 eV Core-core repulsion = 8582.360370 eV Total energy + Delta-G solvation = -2223.575572 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.28723 -38.05298 -36.49070 -34.16590 -32.32939 -30.32703 -25.33182 -23.88887 -22.36503 -19.61175 -18.06827 -17.26180 -16.18433 -15.81037 -15.05874 -14.23712 -14.05486 -13.55135 -12.98167 -12.81562 -12.12118 -11.37847 -10.85165 -10.56221 -10.43208 -9.92060 -9.53780 -9.49030 -9.15620 -7.99189 -7.24145 -4.64980 1.87486 2.81480 3.05236 3.13584 3.23190 3.33877 3.93742 4.17572 4.32626 4.71812 5.46585 5.84801 6.33115 6.42435 6.82227 7.07052 7.43728 7.55890 8.02425 8.09029 8.45424 8.63458 9.05150 9.97247 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.069149 B = 0.014787 C = 0.012762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.824515 B = 1893.156484 C = 2193.449528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.024 3.976 3 Si 1.087 2.913 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.427 4.427 8 H 0.115 0.885 9 N -0.353 5.353 10 C 0.175 3.825 11 C -0.371 4.371 12 C 0.541 3.459 13 O -0.570 6.570 14 N -0.659 5.659 15 H 0.415 0.585 16 C 0.650 3.350 17 O -0.561 6.561 18 H 0.282 0.718 19 H 0.169 0.831 20 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 1.379 2.228 2.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.188 4.188 3 Si 0.910 3.090 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.132 0.868 9 N -0.054 5.054 10 C 0.041 3.959 11 C -0.399 4.399 12 C 0.341 3.659 13 O -0.452 6.452 14 N -0.325 5.325 15 H 0.254 0.746 16 C 0.355 3.645 17 O -0.437 6.437 18 H 0.094 0.906 19 H 0.186 0.814 20 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.333 2.615 1.979 3.540 hybrid contribution 0.121 -2.116 -0.281 2.139 sum 1.454 0.498 1.698 2.290 Atomic orbital electron populations 1.70786 1.07163 1.31983 1.37531 1.26973 0.95866 1.03165 0.92767 0.83249 0.75010 0.72780 0.78001 1.19750 1.20055 1.20115 1.20852 1.03182 0.85162 1.46167 0.86758 1.40965 1.31447 1.05705 1.27332 1.22471 0.87293 1.01054 0.85096 1.21304 1.14603 0.89800 1.14173 1.17315 0.78698 0.91208 0.78664 1.90783 1.56760 1.38032 1.59663 1.44761 1.39426 1.10095 1.38234 0.74553 1.16416 0.84472 0.80946 0.82691 1.90884 1.34885 1.85222 1.32729 0.90551 0.81431 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.67 12.34 55.50 0.68 -19.99 14 2 C 0.02 0.56 4.78 -17.49 -0.08 0.47 14 3 Si 1.09 20.28 29.99 -169.99 -5.10 15.18 14 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 14 5 H -0.28 -4.87 7.11 56.52 0.40 -4.46 14 6 H -0.28 -5.02 7.11 56.52 0.40 -4.62 14 7 C -0.43 -10.65 8.99 -14.89 -0.13 -10.78 14 8 H 0.11 2.94 7.55 -52.49 -0.40 2.55 14 9 N -0.35 -8.46 2.65 -66.31 -0.18 -8.64 14 10 C 0.17 3.74 8.35 -16.35 -0.14 3.60 14 11 C -0.37 -7.54 10.01 -39.39 -0.39 -7.94 14 12 C 0.54 11.80 7.74 -14.91 -0.12 11.69 14 13 O -0.57 -13.49 17.94 5.12 0.09 -13.40 14 14 N -0.66 -13.90 5.23 -18.47 -0.10 -13.99 14 15 H 0.42 7.71 8.88 -40.82 -0.36 7.35 14 16 C 0.65 15.56 8.33 -87.30 -0.73 14.83 14 17 O -0.56 -14.69 16.82 5.30 0.09 -14.60 14 18 H 0.28 7.04 6.94 -40.82 -0.28 6.75 14 19 H 0.17 3.46 6.45 -52.48 -0.34 3.13 14 20 H 0.15 2.73 8.06 -52.49 -0.42 2.31 14 LS Contribution 192.38 15.07 2.90 2.90 Total: -1.00 -28.55 192.38 -3.80 -32.35 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -0.60 Total: 8.32 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -1.59 Total: 11.87 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.41 Total: -42.62 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: 0.18 Total: -28.00 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.10 Total: 15.18 kcal Total LS contribution 2.90 Total: 2.90 kcal Total: -28.55 -3.80 -32.35 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026515441.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.385 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds