Wall clock time and date at job start Mon Mar 30 2020 02:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86793 * 120.00172 * 2 1 4 4 H 1.48500 * 109.47310 * 274.65583 * 3 2 1 5 5 H 1.48496 * 109.47192 * 34.65634 * 3 2 1 6 6 H 1.48501 * 109.47149 * 154.65487 * 3 2 1 7 7 C 1.39926 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00152 * 162.35353 * 7 2 1 9 9 C 1.41153 * 120.00078 * 342.35883 * 7 2 1 10 10 C 1.40727 * 120.27452 * 335.06987 * 9 7 2 11 11 C 1.37644 * 119.78566 * 179.97438 * 10 9 7 12 12 F 1.35108 * 119.81993 * 179.97438 * 11 10 9 13 13 C 1.39061 * 120.36007 * 0.02562 * 11 10 9 14 14 C 1.38270 * 120.56359 * 359.71694 * 13 11 10 15 15 C 1.38397 * 120.20214 * 0.56308 * 14 13 11 16 16 O 1.35673 * 120.18518 * 179.71716 * 15 14 13 17 17 H 0.97005 * 119.99986 * 359.97438 * 1 2 3 18 18 H 1.07999 * 120.10374 * 359.95451 * 10 9 7 19 19 H 1.08000 * 119.71763 * 180.02562 * 13 11 10 20 20 H 1.08004 * 119.90018 * 180.28196 * 14 13 11 21 21 H 0.96703 * 113.99776 * 269.72597 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3918 2.1032 -1.3954 5 1 1.4929 2.6222 0.7961 6 1 3.5860 1.4136 0.5993 7 6 2.0083 -1.2118 0.0005 8 1 3.0502 -1.2340 -0.2830 9 6 1.3522 -2.4053 0.3715 10 6 0.2250 -2.3632 1.2129 11 6 -0.4073 -3.5332 1.5679 12 9 -1.4893 -3.4936 2.3761 13 6 0.0621 -4.7557 1.1001 14 6 1.1652 -4.8137 0.2685 15 6 1.8223 -3.6523 -0.0985 16 8 2.9081 -3.7100 -0.9099 17 1 -0.4850 0.8401 0.0004 18 1 -0.1426 -1.4161 1.5791 19 1 -0.4422 -5.6673 1.3849 20 1 1.5179 -5.7687 -0.0922 21 1 3.7477 -3.7959 -0.4379 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034179364.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:23 Heat of formation + Delta-G solvation = -100.129126 kcal Electronic energy + Delta-G solvation = -10477.180676 eV Core-core repulsion = 8231.326392 eV Total energy + Delta-G solvation = -2245.854285 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.59543 -39.89914 -36.93081 -35.59915 -31.74865 -29.92668 -27.27847 -23.39635 -22.64372 -19.55232 -18.86720 -17.80551 -16.98441 -16.50850 -16.30848 -15.91893 -14.83758 -14.56243 -14.29865 -13.62081 -13.37003 -12.89708 -12.65015 -12.32792 -12.07000 -11.96355 -11.12307 -10.90963 -9.61313 -9.14683 -8.73451 -6.46945 0.63966 0.81026 1.37987 1.47168 1.54838 2.16811 2.55140 3.37862 3.73919 3.85719 4.36969 4.51869 4.96181 4.99830 5.20087 5.51324 5.57984 5.71934 5.85088 6.16827 6.43753 6.68184 6.74661 7.32895 8.20764 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.043548 B = 0.016515 C = 0.012386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.812262 B = 1695.025101 C = 2260.147305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.029 3.971 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.471 4.471 8 H 0.090 0.910 9 C 0.078 3.922 10 C -0.220 4.220 11 C 0.088 3.912 12 F -0.164 7.164 13 C -0.264 4.264 14 C -0.085 4.085 15 C -0.037 4.037 16 O -0.497 6.497 17 H 0.293 0.707 18 H 0.113 0.887 19 H 0.134 0.866 20 H 0.141 0.859 21 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -1.092 1.372 3.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.499 4.499 8 H 0.108 0.892 9 C 0.074 3.926 10 C -0.240 4.240 11 C 0.069 3.931 12 F -0.143 7.143 13 C -0.284 4.284 14 C -0.103 4.103 15 C -0.083 4.083 16 O -0.306 6.306 17 H 0.104 0.896 18 H 0.131 0.869 19 H 0.152 0.848 20 H 0.158 0.842 21 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.880 -0.892 0.933 3.156 hybrid contribution 0.128 0.662 0.496 0.837 sum 3.009 -0.230 1.429 3.339 Atomic orbital electron populations 1.69894 1.09411 1.31234 1.33779 1.26983 0.95531 1.05226 0.90934 0.85046 0.79240 0.75092 0.79491 1.18652 1.19059 1.17546 1.19766 0.98861 0.91715 1.39527 0.89218 1.18057 0.91707 0.93722 0.89090 1.21086 1.01708 0.96113 1.05104 1.17907 0.85688 0.95677 0.93805 1.91331 1.53576 1.97628 1.71793 1.20490 1.03532 0.95407 1.09001 1.20968 0.95661 0.97581 0.96110 1.18783 0.95139 0.92254 1.02090 1.84711 1.15732 1.95857 1.34320 0.89645 0.86934 0.84824 0.84167 0.76599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.83 10.98 21.83 0.24 -42.60 14 2 C 0.03 1.46 5.14 85.25 0.44 1.90 14 3 Si 0.99 37.07 29.59 68.60 2.03 39.10 14 4 H -0.26 -9.46 7.11 99.48 0.71 -8.75 14 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 14 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 14 7 C -0.47 -24.80 8.71 23.40 0.20 -24.59 14 8 H 0.09 4.47 7.65 -2.91 -0.02 4.45 14 9 C 0.08 4.17 5.58 -21.20 -0.12 4.05 14 10 C -0.22 -11.89 8.65 22.74 0.20 -11.70 14 11 C 0.09 4.38 7.28 22.33 0.16 4.54 14 12 F -0.16 -7.80 17.26 44.97 0.78 -7.02 14 13 C -0.26 -11.62 10.02 22.48 0.23 -11.39 14 14 C -0.08 -3.63 9.97 22.32 0.22 -3.41 14 15 C -0.04 -1.79 6.74 23.06 0.16 -1.64 14 16 O -0.50 -21.37 12.79 -89.90 -1.15 -22.52 14 17 H 0.29 13.75 8.30 -92.70 -0.77 12.98 14 18 H 0.11 6.39 6.19 -2.91 -0.02 6.38 14 19 H 0.13 5.00 8.06 -2.91 -0.02 4.98 14 20 H 0.14 4.95 8.06 -2.91 -0.02 4.92 14 21 H 0.38 12.33 9.06 -74.06 -0.67 11.66 14 Total: -1.00 -59.79 201.34 3.98 -55.81 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.59 Total: 19.46 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 1.49 Total: -42.23 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.24 Total: -42.60 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.15 Total: -22.52 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.78 Total: -7.02 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -59.79 3.98 -55.81 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034179364.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.319 kcal (2) G-P(sol) polarization free energy of solvation -59.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds