Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30449 * 1 3 3 Si 1.86802 * 119.99867 * 2 1 4 4 H 1.48499 * 109.47080 * 269.99777 * 3 2 1 5 5 H 1.48498 * 109.47163 * 29.99755 * 3 2 1 6 6 H 1.48504 * 109.46859 * 150.00029 * 3 2 1 7 7 C 1.40714 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.39012 * 120.00372 * 0.02562 * 7 2 1 10 10 S 1.75840 * 125.45447 * 359.97438 * 9 7 2 11 11 C 1.75669 * 91.45704 * 179.97438 * 10 9 7 12 12 C 1.33837 * 110.78023 * 0.02562 * 11 10 9 13 13 C 1.38674 * 115.30714 * 359.97438 * 12 11 10 14 14 C 1.41648 * 123.31542 * 179.97438 * 13 12 11 15 15 O 1.21441 * 119.99922 * 0.02591 * 14 13 12 16 16 H 0.96996 * 119.99863 * 0.02562 * 1 2 3 17 17 H 1.08003 * 124.60285 * 179.72874 * 11 10 9 18 18 H 1.08000 * 122.34789 * 179.97438 * 12 11 10 19 19 H 1.07995 * 119.99923 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3045 0.0000 0.0000 3 14 2.2385 1.6178 0.0000 4 1 2.4860 2.0464 -1.4001 5 1 1.4359 2.6527 0.7000 6 1 3.5361 1.4402 0.7001 7 6 2.0081 -1.2186 -0.0005 8 1 3.0881 -1.2186 -0.0001 9 6 1.3131 -2.4225 -0.0016 10 16 -0.4374 -2.5898 -0.0018 11 6 -0.3148 -4.3422 -0.0041 12 6 0.9666 -4.7286 -0.0041 13 6 1.8960 -3.6994 -0.0029 14 6 3.2960 -3.9154 -0.0022 15 8 3.7357 -5.0474 -0.0031 16 1 -0.4850 0.8400 -0.0004 17 1 -1.1588 -5.0161 -0.0008 18 1 1.2564 -5.7689 -0.0050 19 1 3.9722 -3.0734 -0.0008 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039062094.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = -55.537903 kcal Electronic energy + Delta-G solvation = -8545.092318 eV Core-core repulsion = 6731.551736 eV Total energy + Delta-G solvation = -1813.540582 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 182.014 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.75450 -37.23178 -35.94167 -31.50733 -28.11919 -24.83034 -22.89820 -20.40968 -18.95458 -17.54947 -17.10226 -16.10891 -15.24158 -14.86061 -14.35401 -14.08849 -13.81845 -13.48559 -13.06159 -12.65217 -12.03861 -11.87228 -11.43332 -11.26239 -10.08952 -9.68306 -9.06948 -8.86491 -6.84041 0.51718 1.22839 1.39101 1.53483 1.57297 1.61048 1.94115 2.13450 2.47810 3.15283 4.11627 4.65851 4.74661 4.85777 5.25397 5.38380 5.67966 5.84815 6.07215 6.28160 6.33333 7.23925 7.76096 Molecular weight = 182.01amu Principal moments of inertia in cm(-1) A = 0.046990 B = 0.017566 C = 0.012844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.726160 B = 1593.595179 C = 2179.480013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.015 3.985 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.257 1.257 6 H -0.247 1.247 7 C -0.352 4.352 8 H 0.123 0.877 9 C 0.040 3.960 10 S 0.109 5.891 11 C -0.394 4.394 12 C -0.046 4.046 13 C -0.454 4.454 14 C 0.395 3.605 15 O -0.591 6.591 16 H 0.322 0.678 17 H 0.142 0.858 18 H 0.098 0.902 19 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 8.185 0.018 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.210 4.210 3 Si 0.834 3.166 4 H -0.178 1.178 5 H -0.181 1.181 6 H -0.170 1.170 7 C -0.386 4.386 8 H 0.141 0.859 9 C -0.081 4.081 10 S 0.366 5.634 11 C -0.526 4.526 12 C -0.073 4.073 13 C -0.460 4.460 14 C 0.271 3.729 15 O -0.481 6.481 16 H 0.136 0.864 17 H 0.160 0.840 18 H 0.116 0.884 19 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.536 8.605 0.024 8.741 hybrid contribution 1.043 -0.864 -0.011 1.354 sum -0.493 7.741 0.013 7.756 Atomic orbital electron populations 1.68726 1.09667 1.34023 1.25892 1.27606 0.95932 1.06323 0.91141 0.84605 0.78955 0.72590 0.80432 1.17779 1.18101 1.17009 1.20090 0.97494 0.89089 1.31971 0.85892 1.22476 0.96236 0.95721 0.93714 1.84291 1.04315 0.96419 1.78386 1.25593 0.99155 1.02528 1.25337 1.19666 0.92654 0.97961 0.97055 1.18669 0.96934 0.92644 1.37783 1.21702 0.89809 0.90732 0.70695 1.90343 1.81302 1.29068 1.47416 0.86373 0.83984 0.88374 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -31.32 10.64 21.96 0.23 -31.09 13 2 C 0.02 0.60 5.51 85.50 0.47 1.07 13 3 Si 1.02 28.52 29.57 68.60 2.03 30.55 13 4 H -0.25 -6.92 7.11 99.48 0.71 -6.21 13 5 H -0.26 -6.76 7.11 99.48 0.71 -6.06 13 6 H -0.25 -6.75 7.11 99.48 0.71 -6.04 13 7 C -0.35 -15.75 8.96 23.06 0.21 -15.55 13 8 H 0.12 4.97 6.74 -2.91 -0.02 4.95 13 9 C 0.04 2.04 6.22 22.97 0.14 2.18 13 10 S 0.11 5.25 20.23 -56.49 -1.14 4.11 13 11 C -0.39 -19.25 11.16 66.82 0.75 -18.50 13 12 C -0.05 -2.39 9.67 21.37 0.21 -2.18 13 13 C -0.45 -23.97 5.74 -21.82 -0.13 -24.10 13 14 C 0.39 19.85 11.02 68.66 0.76 20.61 13 15 O -0.59 -32.70 17.37 -3.53 -0.06 -32.76 13 16 H 0.32 11.37 8.29 -92.71 -0.77 10.60 13 17 H 0.14 6.20 8.06 -2.91 -0.02 6.17 13 18 H 0.10 5.09 7.89 -2.91 -0.02 5.07 13 19 H 0.09 3.83 6.94 -2.91 -0.02 3.81 13 Total: -1.00 -58.10 195.30 4.73 -53.37 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.27 Total: 12.29 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 2.40 Total: -36.47 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.23 Total: -31.09 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.06 Total: -32.76 kcal Atomic # 14 Polarization: 28.52 SS G_CDS: 2.03 Total: 30.55 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.14 Total: 4.11 kcal Total: -58.10 4.73 -53.37 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039062094.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.168 kcal (2) G-P(sol) polarization free energy of solvation -58.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds