Wall clock time and date at job start Mon Mar 30 2020 02:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30468 * 1 3 3 Si 1.86805 * 119.99979 * 2 1 4 4 H 1.48499 * 109.47250 * 85.01870 * 3 2 1 5 5 H 1.48504 * 109.47055 * 205.01231 * 3 2 1 6 6 H 1.48501 * 109.46985 * 325.01591 * 3 2 1 7 7 C 1.40640 * 120.00278 * 179.72750 * 2 1 3 8 8 H 1.08003 * 120.00703 * 186.49128 * 7 2 1 9 9 C 1.39388 * 119.99793 * 6.48790 * 7 2 1 10 10 C 1.40034 * 125.94842 * 186.23475 * 9 7 2 11 11 C 1.38819 * 106.81015 * 179.97438 * 10 9 7 12 12 C 1.38596 * 107.10720 * 0.02562 * 11 10 9 13 13 C 1.46575 * 125.67971 * 179.97438 * 12 11 10 14 14 O 1.21631 * 119.99924 * 359.97438 * 13 12 11 15 15 O 1.34941 * 120.00258 * 179.97438 * 13 12 11 16 16 O 1.34875 * 108.64297 * 359.72893 * 12 11 10 17 17 H 0.96996 * 119.99847 * 359.97438 * 1 2 3 18 18 H 1.07997 * 126.59791 * 359.97338 * 10 9 7 19 19 H 1.08004 * 126.45083 * 180.02562 * 11 10 9 20 20 H 0.96696 * 114.00147 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2387 1.6178 0.0000 4 1 2.3809 2.1073 1.3948 5 1 3.5850 1.4121 -0.5920 6 1 1.4928 2.6200 -0.8027 7 6 2.0079 -1.2179 0.0058 8 1 3.0828 -1.2205 0.1115 9 6 1.3177 -2.4218 -0.1249 10 6 1.8714 -3.7032 -0.0132 11 6 0.8362 -4.6066 -0.2114 12 6 -0.3134 -3.8661 -0.4376 13 6 -1.6474 -4.4158 -0.6956 14 8 -1.8136 -5.6203 -0.7246 15 8 -2.6912 -3.5855 -0.9010 16 8 -0.0012 -2.5555 -0.3754 17 1 -0.4850 0.8400 0.0004 18 1 2.9051 -3.9427 0.1882 19 1 0.9121 -5.6838 -0.1928 20 1 -3.5292 -4.0399 -1.0632 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039066094.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:21 Heat of formation + Delta-G solvation = -125.510163 kcal Electronic energy + Delta-G solvation = -10461.418893 eV Core-core repulsion = 8202.091214 eV Total energy + Delta-G solvation = -2259.327678 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.041 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.39709 -40.58982 -36.91708 -35.87501 -33.25616 -31.39368 -27.93196 -24.32694 -21.96964 -21.43353 -19.61390 -18.92055 -18.16856 -17.06189 -16.83353 -15.68119 -15.59556 -14.52169 -14.24056 -13.55381 -13.32469 -13.18613 -12.97899 -12.58238 -12.52274 -11.92161 -11.68759 -11.40849 -10.51257 -9.50070 -8.95362 -6.75420 0.35721 1.30498 1.39722 1.59644 1.87844 2.12434 2.28168 2.33045 3.01732 3.11146 4.35759 4.74916 4.85082 4.92580 5.15526 5.33480 5.55204 5.79478 5.92659 6.33724 6.41257 6.88526 7.24592 8.03859 Molecular weight = 182.04amu Principal moments of inertia in cm(-1) A = 0.069467 B = 0.012628 C = 0.010753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.974483 B = 2216.682564 C = 2603.259185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.018 3.982 3 Si 1.014 2.986 4 H -0.254 1.254 5 H -0.243 1.243 6 H -0.265 1.265 7 C -0.437 4.437 8 H 0.134 0.866 9 C 0.192 3.808 10 C -0.385 4.385 11 C -0.054 4.054 12 C -0.278 4.278 13 C 0.564 3.436 14 O -0.567 6.567 15 O -0.505 6.505 16 O -0.176 6.176 17 H 0.304 0.696 18 H 0.151 0.849 19 H 0.151 0.849 20 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 2.996 -0.270 3.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.204 4.204 3 Si 0.831 3.169 4 H -0.178 1.178 5 H -0.166 1.166 6 H -0.190 1.190 7 C -0.464 4.464 8 H 0.152 0.848 9 C 0.138 3.862 10 C -0.404 4.404 11 C -0.074 4.074 12 C -0.324 4.324 13 C 0.418 3.582 14 O -0.466 6.466 15 O -0.316 6.316 16 O -0.075 6.075 17 H 0.115 0.885 18 H 0.168 0.832 19 H 0.169 0.831 20 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 1.297 3.191 -0.254 3.454 hybrid contribution -0.492 -0.074 -0.074 0.503 sum 0.805 3.116 -0.328 3.236 Atomic orbital electron populations 1.69720 1.10073 1.32776 1.28156 1.27551 0.95786 1.06363 0.90704 0.84704 0.79053 0.73120 0.80033 1.17835 1.16555 1.18954 1.19712 0.96863 0.88018 1.41762 0.84815 1.20556 0.79942 0.95910 0.89824 1.21840 1.00402 0.91122 1.27063 1.21761 0.90822 0.99493 0.95281 1.20578 0.93649 0.83407 1.34811 1.18893 0.83109 0.83301 0.72894 1.90794 1.85263 1.15782 1.54747 1.85150 1.21055 1.41588 1.83834 1.84484 1.25711 1.23756 1.73578 0.88486 0.83164 0.83144 0.72253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.76 12.04 21.95 0.26 -39.50 14 2 C 0.02 0.83 5.50 85.48 0.47 1.30 14 3 Si 1.01 33.13 29.57 68.60 2.03 35.16 14 4 H -0.25 -7.89 7.11 99.48 0.71 -7.18 14 5 H -0.24 -7.41 7.11 99.48 0.71 -6.70 14 6 H -0.27 -8.37 7.11 99.48 0.71 -7.67 14 7 C -0.44 -21.66 9.31 23.13 0.22 -21.45 14 8 H 0.13 5.82 7.86 -2.91 -0.02 5.80 14 9 C 0.19 10.51 6.75 22.98 0.16 10.67 14 10 C -0.38 -19.07 10.90 22.84 0.25 -18.82 14 11 C -0.05 -2.68 10.61 22.49 0.24 -2.44 14 12 C -0.28 -15.01 7.22 24.53 0.18 -14.84 14 13 C 0.56 27.43 8.28 70.00 0.58 28.01 14 14 O -0.57 -27.75 17.60 19.41 0.34 -27.41 14 15 O -0.50 -21.09 13.56 -57.04 -0.77 -21.87 14 16 O -0.18 -10.30 9.04 -13.84 -0.13 -10.43 14 17 H 0.30 13.56 8.29 -92.71 -0.77 12.79 14 18 H 0.15 6.46 8.06 -2.91 -0.02 6.44 14 19 H 0.15 6.54 8.06 -2.91 -0.02 6.52 14 20 H 0.42 11.76 8.98 -74.06 -0.67 11.09 14 Total: -1.00 -64.96 202.95 4.44 -60.52 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.62 Total: 21.09 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 2.08 Total: -17.56 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.26 Total: -39.50 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -0.56 Total: -59.70 kcal Atomic # 14 Polarization: 33.13 SS G_CDS: 2.03 Total: 35.16 kcal Total: -64.96 4.44 -60.52 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039066094.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.991 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds