Wall clock time and date at job start Mon Mar 30 2020 02:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30571 * 1 3 3 Si 1.86802 * 119.99829 * 2 1 4 4 H 1.48502 * 109.46930 * 239.99937 * 3 2 1 5 5 H 1.48492 * 109.47051 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46996 * 120.00404 * 3 2 1 7 7 C 1.40384 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.40673 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.46904 * 127.46925 * 0.02732 * 9 7 2 11 11 C 1.34337 * 106.30221 * 179.97438 * 10 9 7 12 12 O 1.33934 * 110.12201 * 0.24062 * 11 10 9 13 13 C 1.34607 * 111.02513 * 359.58602 * 12 11 10 14 14 C 1.46158 * 126.25696 * 180.20044 * 13 12 11 15 15 O 1.21677 * 119.99807 * 180.23510 * 14 13 12 16 16 O 1.35001 * 120.00001 * 0.23840 * 14 13 12 17 17 H 0.96998 * 120.00243 * 0.02562 * 1 2 3 18 18 H 1.07996 * 126.84441 * 359.95189 * 10 9 7 19 19 H 1.08002 * 124.93295 * 179.97438 * 11 10 9 20 20 H 0.96696 * 114.00605 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 3.0934 1.6964 -1.2125 5 1 1.2747 2.7464 -0.0006 6 1 3.0935 1.6964 1.2124 7 6 2.0076 -1.2158 0.0005 8 1 3.0876 -1.2157 0.0001 9 6 1.3042 -2.4340 0.0016 10 6 -0.1524 -2.6250 0.0018 11 6 -0.3587 -3.9524 0.0024 12 8 0.8132 -4.6008 0.0079 13 6 1.8441 -3.7353 0.0021 14 6 3.2640 -4.0821 0.0015 15 8 4.1050 -3.2027 0.0003 16 8 3.6423 -5.3780 0.0022 17 1 -0.4850 0.8400 -0.0004 18 1 -0.9068 -1.8522 0.0018 19 1 -1.3286 -4.4276 0.0030 20 1 4.6005 -5.5081 0.0012 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039066120.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:23 Heat of formation + Delta-G solvation = -119.786981 kcal Electronic energy + Delta-G solvation = -10567.196076 eV Core-core repulsion = 8308.116574 eV Total energy + Delta-G solvation = -2259.079503 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.28229 -40.33631 -36.79678 -36.11913 -32.74880 -30.74336 -28.06141 -24.44795 -22.16324 -21.02145 -19.45582 -18.68090 -17.75978 -16.82647 -16.73066 -16.10298 -15.50062 -14.42045 -14.29047 -13.96620 -13.50453 -13.14714 -12.65676 -12.34783 -12.15760 -11.90790 -11.60682 -11.17870 -10.14224 -9.31465 -8.90076 -6.68908 0.43592 1.34671 1.42012 1.47898 1.98975 2.13498 2.25592 2.37841 3.10797 3.21063 4.39923 4.76004 4.98948 5.16700 5.37011 5.50847 5.73427 5.97286 6.25835 6.52311 6.55208 6.88053 7.43933 8.03414 Molecular weight = 182.04amu Principal moments of inertia in cm(-1) A = 0.046132 B = 0.016494 C = 0.012202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.803925 B = 1697.168365 C = 2294.129955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.033 3.967 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.247 1.247 6 H -0.261 1.261 7 C -0.424 4.424 8 H 0.087 0.913 9 C 0.071 3.929 10 C -0.269 4.269 11 C 0.003 3.997 12 O -0.213 6.213 13 C -0.318 4.318 14 C 0.547 3.453 15 O -0.576 6.576 16 O -0.512 6.512 17 H 0.303 0.697 18 H 0.168 0.832 19 H 0.238 0.762 20 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -0.019 0.000 1.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.171 1.171 6 H -0.185 1.185 7 C -0.451 4.451 8 H 0.105 0.895 9 C 0.066 3.934 10 C -0.289 4.289 11 C -0.065 4.065 12 O -0.115 6.115 13 C -0.364 4.364 14 C 0.404 3.596 15 O -0.475 6.475 16 O -0.324 6.324 17 H 0.115 0.885 18 H 0.185 0.815 19 H 0.254 0.746 20 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.530 0.055 0.002 1.531 hybrid contribution 0.821 0.505 0.000 0.964 sum -0.709 0.561 0.002 0.904 Atomic orbital electron populations 1.69533 1.08961 1.32096 1.30143 1.27196 0.96006 1.05125 0.90473 0.84975 0.78777 0.74084 0.80281 1.18510 1.17056 1.18501 1.19899 0.95937 0.90311 1.38921 0.89520 1.19841 0.93018 0.91296 0.89249 1.23538 0.95655 0.96440 1.13281 1.24687 0.89231 0.92471 1.00079 1.83551 1.13562 1.36596 1.77840 1.20279 0.84970 0.88168 1.42995 1.18620 0.86433 0.80172 0.74411 1.90770 1.52211 1.50103 1.54430 1.85050 1.32492 1.27427 1.87462 0.88476 0.81475 0.74615 0.72802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.34 10.45 21.90 0.23 -37.11 14 2 C 0.03 1.60 5.50 85.40 0.47 2.07 14 3 Si 1.00 37.24 29.56 68.60 2.03 39.27 14 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 14 5 H -0.25 -8.05 7.11 99.48 0.71 -7.34 14 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 14 7 C -0.42 -24.10 8.99 23.39 0.21 -23.89 14 8 H 0.09 5.13 6.17 -2.91 -0.02 5.11 14 9 C 0.07 4.06 6.14 -19.77 -0.12 3.94 14 10 C -0.27 -13.50 9.90 23.65 0.23 -13.27 14 11 C 0.00 0.12 11.96 66.93 0.80 0.92 14 12 O -0.21 -10.80 10.54 -1.76 -0.02 -10.81 14 13 C -0.32 -17.84 7.33 24.97 0.18 -17.66 14 14 C 0.55 28.69 8.26 69.88 0.58 29.26 14 15 O -0.58 -32.19 15.67 19.25 0.30 -31.89 14 16 O -0.51 -21.46 13.56 -57.84 -0.78 -22.25 14 17 H 0.30 12.54 8.29 -92.71 -0.77 11.77 14 18 H 0.17 8.17 6.07 -2.91 -0.02 8.15 14 19 H 0.24 7.05 8.06 -2.91 -0.02 7.03 14 20 H 0.41 12.24 8.98 -74.06 -0.67 11.58 14 Total: -1.00 -67.91 196.76 4.74 -63.17 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.63 Total: 18.25 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 2.35 Total: -18.62 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.23 Total: -37.11 kcal Atomic # 8 Polarization: -64.45 SS G_CDS: -0.50 Total: -64.95 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -67.91 4.74 -63.17 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039066120.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.615 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds