Wall clock time and date at job start Mon Mar 30 2020 02:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30446 * 1 3 3 Si 1.86801 * 119.99755 * 2 1 4 4 H 1.48499 * 109.46958 * 239.99458 * 3 2 1 5 5 H 1.48498 * 109.47370 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47161 * 120.00144 * 3 2 1 7 7 C 1.40707 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.38996 * 120.00157 * 0.02562 * 7 2 1 10 10 O 1.34915 * 126.34124 * 359.97093 * 9 7 2 11 11 C 1.34166 * 109.81441 * 180.02562 * 10 9 7 12 12 C 1.35288 * 109.73099 * 359.74347 * 11 10 9 13 13 C 1.41257 * 107.20475 * 0.40521 * 12 11 10 14 14 C 1.46913 * 127.03131 * 179.87550 * 13 12 11 15 15 O 1.21593 * 119.99983 * 179.68251 * 14 13 12 16 16 O 1.34881 * 120.00348 * 359.68049 * 14 13 12 17 17 H 0.97000 * 120.00391 * 359.97438 * 1 2 3 18 18 H 1.07995 * 125.13085 * 180.02562 * 11 10 9 19 19 H 1.07998 * 126.39512 * 180.25282 * 12 11 10 20 20 H 0.96700 * 117.00361 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3045 0.0000 0.0000 3 14 2.2384 1.6178 0.0000 4 1 3.0922 1.6964 -1.2124 5 1 1.2734 2.7465 0.0006 6 1 3.0922 1.6965 1.2125 7 6 2.0080 -1.2185 0.0005 8 1 3.0880 -1.2185 0.0001 9 6 1.3131 -2.4223 0.0005 10 8 -0.0278 -2.5714 0.0006 11 6 -0.3403 -3.8761 0.0012 12 6 0.7917 -4.6170 -0.0042 13 6 1.8802 -3.7167 0.0011 14 6 3.3095 -4.0566 0.0008 15 8 4.1446 -3.1727 0.0000 16 8 3.6954 -5.3490 0.0013 17 1 -0.4851 0.8400 0.0004 18 1 -1.3440 -4.2748 0.0009 19 1 0.8518 -5.6952 -0.0090 20 1 4.6466 -5.5231 0.0014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039066122.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:26 Heat of formation + Delta-G solvation = -127.978255 kcal Electronic energy + Delta-G solvation = -10585.524509 eV Core-core repulsion = 8326.089806 eV Total energy + Delta-G solvation = -2259.434703 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.42193 -40.27528 -36.61599 -35.89549 -33.27689 -31.21909 -27.44795 -24.70395 -22.20263 -21.08525 -19.49548 -18.61592 -17.68799 -16.87589 -16.47236 -15.77769 -15.70110 -14.96218 -14.28283 -13.59550 -13.27915 -13.08485 -12.98173 -12.37923 -12.27863 -11.91525 -11.45708 -11.12906 -10.37858 -9.48225 -9.02739 -6.79605 0.81800 1.34165 1.41280 1.50065 1.70110 2.11690 2.49447 2.60167 3.08211 3.10443 4.50416 4.62536 4.86319 5.07241 5.28642 5.40157 5.84215 5.98490 6.13854 6.33324 6.43374 7.04221 7.52136 7.96688 Molecular weight = 182.04amu Principal moments of inertia in cm(-1) A = 0.045914 B = 0.016780 C = 0.012342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.692816 B = 1668.253529 C = 2268.104295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.024 3.976 3 Si 1.007 2.993 4 H -0.255 1.255 5 H -0.249 1.249 6 H -0.255 1.255 7 C -0.429 4.429 8 H 0.117 0.883 9 C 0.224 3.776 10 O -0.192 6.192 11 C -0.156 4.156 12 C -0.144 4.144 13 C -0.445 4.445 14 C 0.546 3.454 15 O -0.591 6.591 16 O -0.519 6.519 17 H 0.308 0.692 18 H 0.213 0.787 19 H 0.151 0.849 20 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -0.634 -0.006 0.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.199 4.199 3 Si 0.824 3.176 4 H -0.179 1.179 5 H -0.172 1.172 6 H -0.179 1.179 7 C -0.455 4.455 8 H 0.135 0.865 9 C 0.170 3.830 10 O -0.091 6.091 11 C -0.219 4.219 12 C -0.163 4.163 13 C -0.449 4.449 14 C 0.402 3.598 15 O -0.490 6.490 16 O -0.332 6.332 17 H 0.119 0.881 18 H 0.230 0.770 19 H 0.169 0.831 20 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.001 -0.077 -0.007 0.077 hybrid contribution 0.870 -0.017 -0.003 0.870 sum 0.868 -0.093 -0.009 0.874 Atomic orbital electron populations 1.69622 1.09414 1.33015 1.27472 1.27470 0.95965 1.05838 0.90643 0.84876 0.78680 0.73278 0.80771 1.17888 1.17206 1.17898 1.19710 0.96379 0.88486 1.40927 0.86483 1.19887 0.79888 0.93725 0.89474 1.84393 1.22582 1.26448 1.75687 1.24093 1.00230 0.81005 1.16598 1.21463 0.91377 0.99340 1.04102 1.19136 0.90492 0.93750 1.41532 1.19737 0.88550 0.79398 0.72146 1.90686 1.54967 1.49754 1.53591 1.84561 1.33395 1.28050 1.87170 0.88068 0.77026 0.83089 0.72592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -38.80 12.00 21.96 0.26 -38.54 14 2 C 0.02 1.19 5.51 85.50 0.47 1.66 14 3 Si 1.01 36.70 29.57 68.60 2.03 38.73 14 4 H -0.25 -9.16 7.11 99.48 0.71 -8.46 14 5 H -0.25 -8.01 7.11 99.48 0.71 -7.30 14 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 14 7 C -0.43 -24.11 8.95 23.06 0.21 -23.90 14 8 H 0.12 6.71 6.10 -2.91 -0.02 6.69 14 9 C 0.22 12.95 6.83 23.21 0.16 13.11 14 10 O -0.19 -10.61 8.94 -7.27 -0.06 -10.68 14 11 C -0.16 -7.23 12.02 67.14 0.81 -6.43 14 12 C -0.14 -6.76 10.72 22.33 0.24 -6.52 14 13 C -0.45 -24.20 6.25 -19.51 -0.12 -24.32 14 14 C 0.55 27.76 8.32 70.09 0.58 28.34 14 15 O -0.59 -32.52 15.73 19.53 0.31 -32.21 14 16 O -0.52 -20.51 13.30 -57.95 -0.77 -21.28 14 17 H 0.31 13.39 8.29 -92.71 -0.77 12.62 14 18 H 0.21 7.56 8.06 -2.91 -0.02 7.54 14 19 H 0.15 6.04 8.06 -2.91 -0.02 6.01 14 20 H 0.42 11.50 9.11 -74.06 -0.67 10.83 14 Total: -1.00 -67.28 199.07 4.72 -62.56 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.61 Total: 19.47 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 2.34 Total: -18.06 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.26 Total: -38.54 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -0.53 Total: -64.17 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -67.28 4.72 -62.56 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039066122.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.414 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds