Wall clock time and date at job start Mon Mar 30 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48511 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47494 * 300.00057 * 3 2 1 6 6 H 1.48502 * 109.46977 * 60.00785 * 3 2 1 7 7 C 1.37877 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.33391 * 125.19937 * 90.00083 * 11 10 9 13 13 C 1.38423 * 114.92045 * 179.97438 * 12 11 10 14 14 C 1.33390 * 114.91979 * 359.97438 * 13 12 11 15 15 S 1.75878 * 125.20693 * 269.69344 * 11 10 9 16 16 H 0.97000 * 119.99667 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47543 * 59.99886 * 9 7 2 18 18 H 1.09008 * 109.47338 * 300.00399 * 9 7 2 19 19 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 20 20 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 21 21 H 1.07995 * 122.54106 * 359.95411 * 12 11 10 22 22 H 1.08001 * 122.53959 * 180.02562 * 13 12 11 23 23 H 1.07998 * 125.20163 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4917 -4.9672 0.0001 12 6 1.1069 -5.6334 -1.0896 13 6 0.4264 -6.8131 -0.8420 14 6 0.2592 -7.1052 0.4487 15 16 0.9919 -5.8487 1.4376 16 1 -0.4849 0.8401 0.0004 17 1 0.6240 -2.5567 -0.8903 18 1 0.6246 -2.5570 0.8897 19 1 2.8719 -3.6043 0.8895 20 1 2.8719 -3.6043 -0.8906 21 1 1.3105 -5.2790 -2.0892 22 1 0.0596 -7.4493 -1.6339 23 1 -0.2455 -7.9813 0.8284 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041167135.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:03 Heat of formation + Delta-G solvation = 12.530491 kcal Electronic energy + Delta-G solvation = -8473.818986 eV Core-core repulsion = 6799.063165 eV Total energy + Delta-G solvation = -1674.755821 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.47216 -33.88247 -31.72288 -28.13765 -25.11657 -22.87613 -20.80750 -18.71382 -16.75489 -16.00936 -15.00013 -14.48268 -13.36043 -12.93931 -12.48372 -12.18789 -11.86986 -11.62051 -11.05903 -10.93014 -10.60493 -10.37295 -9.83111 -9.68332 -9.13542 -8.37559 -8.05231 -8.02312 -6.01282 -4.04802 1.49034 2.10213 2.47738 3.20770 3.30635 3.38040 3.42169 4.44813 5.34348 5.36367 5.49437 5.89764 6.01372 6.19254 6.54330 6.59341 6.78632 6.88130 7.03488 7.65501 7.76798 7.97821 8.37149 9.02034 9.59383 11.09794 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.091357 B = 0.008835 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.415341 B = 3168.386730 C = 3190.631673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.051 4.051 11 C -0.128 4.128 12 C -0.170 4.170 13 C -0.125 4.125 14 C -0.240 4.240 15 S 0.078 5.922 16 H 0.260 0.740 17 H 0.020 0.980 18 H 0.018 0.982 19 H 0.062 0.938 20 H 0.071 0.929 21 H 0.136 0.864 22 H 0.132 0.868 23 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 -10.797 0.253 10.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.091 4.091 11 C -0.246 4.246 12 C -0.199 4.199 13 C -0.156 4.156 14 C -0.375 4.375 15 S 0.341 5.659 16 H 0.070 0.930 17 H 0.038 0.962 18 H 0.037 0.963 19 H 0.080 0.920 20 H 0.089 0.911 21 H 0.154 0.846 22 H 0.150 0.850 23 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.654 -10.469 1.803 10.751 hybrid contribution 0.102 0.649 -1.526 1.661 sum 1.755 -9.820 0.278 9.980 Atomic orbital electron populations 1.69986 1.06075 1.26562 1.50583 1.25028 0.94857 0.99298 0.95229 0.86519 0.80101 0.83685 0.77605 1.19684 1.20981 1.20973 1.21260 0.93112 0.90844 1.50934 0.92448 1.19123 0.93650 0.90276 0.97798 1.20493 0.97974 0.88936 1.01679 1.25060 1.03914 1.01128 0.94481 1.20081 1.03941 0.96299 0.99548 1.20107 1.01374 0.97978 0.96119 1.25420 1.10720 1.04365 0.97036 1.84201 1.54734 1.15865 1.11130 0.92988 0.96170 0.96314 0.91970 0.91053 0.84585 0.85041 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.33 14 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 14 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 14 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 14 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 14 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 14 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 14 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 14 9 C 0.03 0.77 4.95 -27.89 -0.14 0.63 14 10 C -0.05 -1.09 5.65 -27.88 -0.16 -1.25 14 11 C -0.13 -2.45 5.76 -36.00 -0.21 -2.66 14 12 C -0.17 -2.95 10.05 -41.21 -0.41 -3.37 14 13 C -0.12 -1.88 10.18 -41.21 -0.42 -2.30 14 14 C -0.24 -3.53 11.23 29.04 0.33 -3.20 14 15 S 0.08 1.32 23.33 -107.50 -2.51 -1.19 14 16 H 0.26 7.41 8.31 -40.82 -0.34 7.07 14 17 H 0.02 0.56 8.14 -51.93 -0.42 0.14 14 18 H 0.02 0.52 8.14 -51.92 -0.42 0.10 14 19 H 0.06 1.28 8.14 -51.93 -0.42 0.86 14 20 H 0.07 1.44 8.14 -51.93 -0.42 1.02 14 21 H 0.14 2.21 8.06 -52.49 -0.42 1.79 14 22 H 0.13 1.61 8.06 -52.49 -0.42 1.18 14 23 H 0.16 1.81 8.06 -52.49 -0.42 1.39 14 LS Contribution 222.66 15.07 3.36 3.36 Total: -1.00 -30.07 222.66 -7.36 -37.43 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -2.50 Total: -4.14 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -1.42 Total: -25.77 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.51 Total: -1.19 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.07 -7.36 -37.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041167135.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.960 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds