Wall clock time and date at job start Mon Mar 30 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48511 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47494 * 300.00057 * 3 2 1 6 6 H 1.48502 * 109.46977 * 60.00785 * 3 2 1 7 7 C 1.37877 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.33391 * 125.19937 * 90.00083 * 11 10 9 13 13 C 1.38423 * 114.92045 * 179.97438 * 12 11 10 14 14 C 1.33390 * 114.91979 * 359.97438 * 13 12 11 15 15 S 1.75878 * 125.20693 * 269.69344 * 11 10 9 16 16 H 0.97000 * 119.99667 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47543 * 59.99886 * 9 7 2 18 18 H 1.09008 * 109.47338 * 300.00399 * 9 7 2 19 19 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 20 20 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 21 21 H 1.07995 * 122.54106 * 359.95411 * 12 11 10 22 22 H 1.08001 * 122.53959 * 180.02562 * 13 12 11 23 23 H 1.07998 * 125.20163 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4917 -4.9672 0.0001 12 6 1.1069 -5.6334 -1.0896 13 6 0.4264 -6.8131 -0.8420 14 6 0.2592 -7.1052 0.4487 15 16 0.9919 -5.8487 1.4376 16 1 -0.4849 0.8401 0.0004 17 1 0.6240 -2.5567 -0.8903 18 1 0.6246 -2.5570 0.8897 19 1 2.8719 -3.6043 0.8895 20 1 2.8719 -3.6043 -0.8906 21 1 1.3105 -5.2790 -2.0892 22 1 0.0596 -7.4493 -1.6339 23 1 -0.2455 -7.9813 0.8284 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041167135.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:03 Heat of formation + Delta-G solvation = -4.727678 kcal Electronic energy + Delta-G solvation = -8474.567356 eV Core-core repulsion = 6799.063165 eV Total energy + Delta-G solvation = -1675.504191 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.80514 -35.84281 -33.63620 -29.82952 -26.90252 -24.46770 -22.60378 -20.02161 -18.68029 -17.65756 -16.53871 -16.27940 -15.07930 -14.66966 -14.05041 -13.76125 -13.45312 -13.18404 -12.85579 -12.75456 -12.42764 -11.83652 -11.68883 -11.52737 -11.24352 -10.58676 -9.43084 -9.34550 -8.21475 -6.34131 0.18352 0.79617 1.19872 1.40394 1.40702 1.54367 1.92897 2.40465 3.11452 4.06793 4.28640 4.41990 4.71668 4.76546 4.78648 5.07611 5.26770 5.43994 5.48148 5.59538 5.73455 5.80679 6.18734 6.82296 7.35551 8.90434 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.091357 B = 0.008835 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.415341 B = 3168.386730 C = 3190.631673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.037 3.963 10 C -0.037 4.037 11 C -0.174 4.174 12 C -0.162 4.162 13 C -0.135 4.135 14 C -0.218 4.218 15 S 0.065 5.935 16 H 0.264 0.736 17 H -0.008 1.008 18 H -0.011 1.011 19 H 0.063 0.937 20 H 0.077 0.923 21 H 0.142 0.858 22 H 0.167 0.833 23 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -11.621 -0.004 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.001 4.001 10 C -0.076 4.076 11 C -0.291 4.291 12 C -0.192 4.192 13 C -0.165 4.165 14 C -0.353 4.353 15 S 0.327 5.673 16 H 0.073 0.927 17 H 0.010 0.990 18 H 0.007 0.993 19 H 0.081 0.919 20 H 0.095 0.905 21 H 0.159 0.841 22 H 0.184 0.816 23 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.110 -11.305 1.548 11.604 hybrid contribution -0.100 0.806 -1.455 1.666 sum 2.010 -10.499 0.093 10.690 Atomic orbital electron populations 1.70122 1.07920 1.27808 1.51459 1.26023 0.95784 1.03518 0.94554 0.85344 0.79107 0.78453 0.77807 1.18367 1.20280 1.20366 1.21708 0.93714 0.92034 1.50847 0.91725 1.18942 0.93971 0.92273 0.94895 1.20136 0.96877 0.88567 1.02002 1.24858 1.06562 1.01430 0.96292 1.20415 1.02665 0.96758 0.99380 1.20406 1.01214 0.97540 0.97357 1.25896 1.08883 1.04116 0.96385 1.84193 1.55281 1.16798 1.11011 0.92708 0.98957 0.99310 0.91876 0.90493 0.84054 0.81559 0.78997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.39 14 2 C 0.00 -0.06 5.46 84.65 0.46 0.41 14 3 Si 0.97 44.51 29.54 68.60 2.03 46.54 14 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 14 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 14 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 14 7 C -0.55 -31.47 9.11 25.60 0.23 -31.23 14 8 H 0.06 3.54 7.74 -2.91 -0.02 3.52 14 9 C 0.04 2.01 4.95 29.85 0.15 2.16 14 10 C -0.04 -1.59 5.65 29.85 0.17 -1.42 14 11 C -0.17 -6.63 5.76 24.59 0.14 -6.49 14 12 C -0.16 -5.44 10.05 21.22 0.21 -5.23 14 13 C -0.14 -3.67 10.18 21.22 0.22 -3.45 14 14 C -0.22 -5.71 11.23 66.72 0.75 -4.96 14 15 S 0.06 2.12 23.33 -56.49 -1.32 0.80 14 16 H 0.26 15.23 8.31 -92.71 -0.77 14.46 14 17 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 14 18 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 14 19 H 0.06 2.65 8.14 -2.39 -0.02 2.63 14 20 H 0.08 3.15 8.14 -2.39 -0.02 3.13 14 21 H 0.14 4.45 8.06 -2.91 -0.02 4.43 14 22 H 0.17 3.34 8.06 -2.91 -0.02 3.32 14 23 H 0.19 3.57 8.06 -2.91 -0.02 3.55 14 Total: -1.00 -64.95 222.66 4.51 -60.44 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: 1.18 Total: -0.18 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 2.33 Total: -50.22 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.28 Total: -57.39 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.32 Total: 0.80 kcal Total: -64.95 4.51 -60.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041167135.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.715 kcal (2) G-P(sol) polarization free energy of solvation -64.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds