Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32572 * 124.55647 * 2 1 4 4 C 1.44756 * 113.16374 * 180.21179 * 3 2 1 5 5 C 1.41260 * 123.64404 * 179.73706 * 4 3 2 6 6 H 1.08000 * 120.00110 * 159.40591 * 5 4 3 7 7 C 1.39686 * 120.00077 * 339.40160 * 5 4 3 8 8 N 1.31056 * 120.00053 * 349.13148 * 7 5 4 9 9 Si 1.86801 * 120.00186 * 169.13505 * 7 5 4 10 10 H 1.48502 * 109.47320 * 59.99746 * 9 7 5 11 11 H 1.48494 * 109.47427 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47120 * 299.99888 * 9 7 5 13 13 C 1.37487 * 112.71006 * 359.54900 * 4 3 2 14 14 C 1.50703 * 124.67182 * 180.17872 * 13 4 3 15 15 S 1.70438 * 110.66289 * 0.43697 * 13 4 3 16 16 H 1.09000 * 109.47487 * 89.99524 * 1 2 3 17 17 H 1.09000 * 109.47350 * 210.00230 * 1 2 3 18 18 H 1.09004 * 109.47497 * 329.99479 * 1 2 3 19 19 H 1.08002 * 123.42078 * 359.94575 * 3 2 1 20 20 H 0.97001 * 120.00236 * 179.97438 * 8 7 5 21 21 H 1.08999 * 109.47172 * 180.31646 * 14 13 4 22 22 H 1.09006 * 109.46855 * 300.31776 * 14 13 4 23 23 H 1.09001 * 109.46875 * 60.31481 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2589 1.0918 0.0000 4 6 3.6779 0.8059 -0.0049 5 6 4.6774 1.8041 -0.0113 6 1 5.6795 1.5670 0.3143 7 6 4.3697 3.0979 -0.4388 8 7 3.2254 3.3376 -1.0309 9 14 5.5893 4.4863 -0.1666 10 1 6.8619 4.1712 -0.8640 11 1 5.0289 5.7506 -0.7075 12 1 5.8470 4.6409 1.2877 13 6 3.9478 -0.5422 0.0014 14 6 5.3313 -1.1396 0.0023 15 16 2.5021 -1.4450 0.0010 16 1 -0.3634 0.0001 -1.0276 17 1 -0.3634 -0.8900 0.5139 18 1 -0.3634 0.8900 0.5139 19 1 1.8539 2.0930 -0.0009 20 1 3.0115 4.2360 -1.3274 21 1 5.2576 -2.2271 0.0022 22 1 5.8692 -0.8118 -0.8874 23 1 5.8680 -0.8119 0.8926 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051952480.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = -14.103901 kcal Electronic energy + Delta-G solvation = -8823.327497 eV Core-core repulsion = 7147.416722 eV Total energy + Delta-G solvation = -1675.910775 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.36737 -34.93347 -33.47311 -29.88475 -28.24050 -24.69117 -22.47042 -20.11355 -18.10287 -17.16550 -16.61149 -15.26152 -14.71779 -14.10747 -13.93926 -13.91829 -13.51682 -13.14841 -12.94139 -12.81304 -12.22288 -12.07386 -11.79923 -11.62937 -11.19837 -10.84784 -8.96390 -8.83358 -8.55365 -6.22446 0.73409 1.37338 1.40358 1.41241 1.49961 1.95240 2.20642 2.26869 3.37247 4.31919 4.64753 4.70200 4.80591 4.82612 4.97264 5.10087 5.18784 5.32877 5.53767 5.67842 5.80218 6.14972 6.48376 6.88628 7.00608 8.39926 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.050754 B = 0.015556 C = 0.012198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.546322 B = 1799.485793 C = 2294.986525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.215 4.215 3 C -0.128 4.128 4 C 0.055 3.945 5 C -0.474 4.474 6 H 0.071 0.929 7 C 0.032 3.968 8 N -0.840 5.840 9 Si 0.987 3.013 10 H -0.263 1.263 11 H -0.267 1.267 12 H -0.262 1.262 13 C -0.424 4.424 14 C -0.023 4.023 15 S 0.043 5.957 16 H 0.071 0.929 17 H 0.077 0.923 18 H 0.072 0.928 19 H 0.132 0.868 20 H 0.286 0.714 21 H 0.055 0.945 22 H 0.039 0.961 23 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -1.633 1.337 2.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.331 4.331 3 C -0.160 4.160 4 C 0.045 3.955 5 C -0.508 4.508 6 H 0.089 0.911 7 C -0.181 4.181 8 N -0.468 5.468 9 Si 0.808 3.192 10 H -0.187 1.187 11 H -0.191 1.191 12 H -0.186 1.186 13 C -0.540 4.540 14 C -0.082 4.082 15 S 0.303 5.697 16 H 0.090 0.910 17 H 0.096 0.904 18 H 0.091 0.909 19 H 0.150 0.850 20 H 0.096 0.904 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.177 -2.984 1.223 3.892 hybrid contribution 0.923 2.235 -0.049 2.418 sum -1.255 -0.749 1.175 1.875 Atomic orbital electron populations 1.20267 0.86777 1.02956 1.02503 1.24442 1.00501 0.96029 1.12087 1.21667 0.93608 0.98541 1.02219 1.18206 0.92754 0.91886 0.92699 1.19303 0.97014 0.94394 1.40053 0.91075 1.26742 0.97790 1.01904 0.91687 1.69893 1.23646 1.23678 1.29577 0.85184 0.78289 0.76165 0.79606 1.18696 1.19103 1.18626 1.23497 0.98989 0.96390 1.35165 1.19546 0.91093 0.97831 0.99712 1.81298 0.96829 1.10368 1.81223 0.90988 0.90434 0.90938 0.85022 0.90387 0.92627 0.94234 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.28 10.33 71.23 0.74 -1.54 14 2 C -0.22 -9.85 6.42 24.53 0.16 -9.69 14 3 C -0.13 -6.81 8.98 22.78 0.20 -6.61 14 4 C 0.05 3.09 5.68 -21.05 -0.12 2.97 14 5 C -0.47 -26.58 8.87 23.36 0.21 -26.38 14 6 H 0.07 3.89 7.58 -2.91 -0.02 3.86 14 7 C 0.03 1.65 5.38 85.16 0.46 2.11 14 8 N -0.84 -44.57 10.73 21.79 0.23 -44.34 14 9 Si 0.99 39.38 29.57 68.60 2.03 41.41 14 10 H -0.26 -10.23 7.11 99.48 0.71 -9.52 14 11 H -0.27 -9.99 7.11 99.48 0.71 -9.29 14 12 H -0.26 -10.21 7.11 99.48 0.71 -9.50 14 13 C -0.42 -21.80 6.39 25.51 0.16 -21.64 14 14 C -0.02 -1.02 9.64 71.24 0.69 -0.34 14 15 S 0.04 1.90 22.91 -56.49 -1.29 0.60 14 16 H 0.07 2.29 8.14 -2.39 -0.02 2.27 14 17 H 0.08 2.28 8.14 -2.39 -0.02 2.26 14 18 H 0.07 2.33 8.14 -2.38 -0.02 2.32 14 19 H 0.13 7.21 6.29 -2.91 -0.02 7.19 14 20 H 0.29 13.74 8.30 -92.71 -0.77 12.97 14 21 H 0.05 2.15 8.12 -2.39 -0.02 2.13 14 22 H 0.04 1.75 8.14 -2.38 -0.02 1.73 14 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 14 Total: -1.00 -59.82 217.22 4.66 -55.17 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.19 Total: 8.26 kcal Atomic # 6 Polarization: -63.60 SS G_CDS: 2.49 Total: -61.11 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.23 Total: -44.34 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.29 Total: 0.60 kcal Total: -59.82 4.66 -55.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051952480.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.064 kcal (2) G-P(sol) polarization free energy of solvation -59.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds