Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86795 * 120.00088 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99801 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99871 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99876 * 3 2 1 7 7 C 1.40119 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.46235 * 119.99706 * 0.02562 * 7 2 1 10 10 O 1.21713 * 120.00325 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99430 * 180.27080 * 9 7 2 12 12 C 1.39241 * 119.99843 * 179.72356 * 11 9 7 13 13 C 1.42077 * 126.90040 * 359.71276 * 12 11 9 14 14 C 1.35217 * 103.95411 * 179.85651 * 13 12 11 15 15 O 1.34096 * 106.63658 * 0.40184 * 14 13 12 16 16 N 1.20915 * 111.75782 * 359.72398 * 15 14 13 17 17 H 0.96999 * 119.99880 * 0.02562 * 1 2 3 18 18 H 0.97000 * 120.00483 * 359.72817 * 11 9 7 19 19 H 1.07996 * 128.02187 * 359.97438 * 13 12 11 20 20 H 1.08008 * 126.68357 * 180.11143 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4880 2.0463 -1.4001 5 1 1.4379 2.6526 0.7000 6 1 3.5380 1.4401 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0869 -1.2134 0.0001 9 6 1.2758 -2.4799 0.0005 10 8 0.0586 -2.4798 0.0005 11 7 1.9497 -3.6470 0.0066 12 6 1.2535 -4.8529 0.0124 13 6 -0.1570 -5.0235 0.0185 14 6 -0.3231 -6.3655 0.0193 15 8 0.9049 -6.9043 0.0229 16 7 1.7666 -6.0560 0.0190 17 1 -0.4850 0.8400 -0.0004 18 1 2.9197 -3.6471 0.0069 19 1 -0.9196 -4.2588 0.0201 20 1 -1.2619 -6.8994 0.0216 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061685491.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = 0.226802 kcal Electronic energy + Delta-G solvation = -10473.906915 eV Core-core repulsion = 8252.324351 eV Total energy + Delta-G solvation = -2221.582563 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -45.64518 -39.88843 -36.05402 -34.67240 -33.17961 -32.15569 -28.63740 -24.57318 -23.25877 -21.84925 -19.36867 -18.84851 -18.40652 -17.56556 -17.12826 -16.01627 -15.11514 -14.89708 -14.49116 -13.86085 -13.26713 -12.90054 -12.80490 -12.28158 -12.25637 -12.03773 -10.99701 -10.54021 -10.06184 -9.42663 -8.44447 -7.02974 0.69395 1.32252 1.40651 1.50034 1.57712 2.10627 2.38906 2.40774 2.66961 3.47997 3.71394 4.23560 4.44786 4.82421 5.18472 5.24803 5.59630 5.94023 6.02996 6.70682 7.04173 7.59578 8.18554 8.49324 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.118313 B = 0.010462 C = 0.009645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 236.604443 B = 2675.729503 C = 2902.483414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.032 3.968 3 Si 1.005 2.995 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.559 4.559 8 H 0.095 0.905 9 C 0.532 3.468 10 O -0.594 6.594 11 N -0.652 5.652 12 C 0.242 3.758 13 C -0.270 4.270 14 C -0.022 4.022 15 O 0.084 5.916 16 N -0.436 5.436 17 H 0.281 0.719 18 H 0.410 0.590 19 H 0.164 0.836 20 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -4.961 0.034 5.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.185 4.185 3 Si 0.824 3.176 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.172 1.172 7 C -0.594 4.594 8 H 0.113 0.887 9 C 0.339 3.661 10 O -0.478 6.478 11 N -0.304 5.304 12 C -0.007 4.007 13 C -0.294 4.294 14 C -0.103 4.103 15 O 0.029 5.971 16 N -0.159 5.159 17 H 0.092 0.908 18 H 0.246 0.754 19 H 0.181 0.819 20 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 1.501 -5.333 0.041 5.540 hybrid contribution -0.094 1.229 -0.018 1.232 sum 1.407 -4.104 0.024 4.339 Atomic orbital electron populations 1.70109 1.09495 1.29779 1.34237 1.27004 0.95655 1.04894 0.90963 0.84895 0.78703 0.74437 0.79593 1.18455 1.19434 1.17241 1.21335 0.95157 0.88841 1.54085 0.88662 1.18842 0.87355 0.82829 0.77076 1.90512 1.15155 1.86401 1.55781 1.43092 1.10081 1.01673 1.75527 1.21306 0.91994 0.87616 0.99786 1.23103 0.95211 0.98392 1.12659 1.26669 0.91399 0.92484 0.99787 1.84669 1.12638 1.30726 1.69023 1.73983 1.14465 0.97197 1.30231 0.90845 0.75438 0.81880 0.71201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.66 11.83 21.85 0.26 -46.40 14 2 C 0.03 1.69 5.50 85.33 0.47 2.16 14 3 Si 1.01 38.69 29.56 68.60 2.03 40.72 14 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 14 5 H -0.27 -9.97 7.11 99.48 0.71 -9.27 14 6 H -0.25 -8.97 7.11 99.48 0.71 -8.26 14 7 C -0.56 -30.47 9.54 24.81 0.24 -30.23 14 8 H 0.10 4.63 7.85 -2.91 -0.02 4.60 14 9 C 0.53 30.40 7.71 86.32 0.67 31.06 14 10 O -0.59 -37.58 12.29 -4.39 -0.05 -37.64 14 11 N -0.65 -31.70 5.41 -313.48 -1.70 -33.40 14 12 C 0.24 11.12 8.17 134.19 1.10 12.22 14 13 C -0.27 -11.39 9.86 22.53 0.22 -11.17 14 14 C -0.02 -0.65 12.28 67.12 0.82 0.17 14 15 O 0.08 2.86 11.19 71.12 0.80 3.66 14 16 N -0.44 -17.85 12.11 -56.32 -0.68 -18.53 14 17 H 0.28 14.59 8.29 -92.71 -0.77 13.82 14 18 H 0.41 17.50 8.80 -92.71 -0.82 16.69 14 19 H 0.16 7.82 6.21 -2.91 -0.02 7.80 14 20 H 0.27 4.26 8.06 -2.91 -0.02 4.23 14 Total: -1.00 -71.25 195.95 4.64 -66.62 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.47 Total: 20.76 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 3.51 Total: 4.21 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -2.12 Total: -98.33 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: 0.74 Total: -33.98 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -71.25 4.64 -66.62 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061685491.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.846 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds