Wall clock time and date at job start Mon Mar 30 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47425 * 2 1 4 4 C 1.50702 * 109.47498 * 120.00182 * 2 1 3 5 5 H 1.08002 * 120.00001 * 119.99882 * 4 2 1 6 6 C 1.37875 * 119.99743 * 299.99996 * 4 2 1 7 7 N 1.31514 * 119.99754 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00054 * 359.97438 * 6 4 2 9 9 H 1.48510 * 109.46873 * 90.00369 * 8 6 4 10 10 H 1.48501 * 109.47427 * 209.99973 * 8 6 4 11 11 H 1.48500 * 109.47546 * 330.00191 * 8 6 4 12 12 N 1.46904 * 109.46977 * 240.00118 * 2 1 3 13 13 C 1.46906 * 111.00071 * 84.99811 * 12 2 1 14 14 H 1.09005 * 110.34127 * 327.28993 * 13 12 2 15 15 C 1.51099 * 110.38764 * 89.69579 * 13 12 2 16 16 C 1.30524 * 111.10451 * 135.24923 * 15 13 12 17 17 C 1.51101 * 111.10408 * 0.02562 * 16 15 13 18 18 C 1.54625 * 110.38691 * 205.00160 * 13 12 2 19 19 H 1.08992 * 109.47608 * 59.99723 * 1 2 3 20 20 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47280 * 299.99380 * 1 2 3 22 22 H 0.97000 * 120.00059 * 180.02562 * 7 6 4 23 23 H 1.00897 * 111.00222 * 321.04642 * 12 2 1 24 24 H 1.08010 * 124.44740 * 315.25090 * 15 13 12 25 25 H 1.08000 * 124.44698 * 180.02562 * 16 15 13 26 26 H 1.08998 * 110.38652 * 224.75395 * 17 16 15 27 27 H 1.09000 * 110.48334 * 102.42317 * 17 16 15 28 28 H 1.08998 * 111.03968 * 334.58211 * 18 13 12 29 29 H 1.09002 * 111.04153 * 98.52128 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5564 8 14 0.6259 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9772 1.9953 3.9070 11 1 0.8490 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2226 -2.3470 14 1 1.2868 0.9651 -2.2834 15 6 3.4325 0.8982 -2.4083 16 6 3.9009 0.9026 -3.6266 17 6 2.9410 0.2312 -4.5810 18 6 1.9774 -0.5672 -3.6722 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 1.9036 -0.5279 4.4375 23 1 1.4495 -1.4979 -1.4101 24 1 3.9429 1.3218 -1.5559 25 1 4.8500 1.3299 -3.9146 26 1 3.4782 -0.4425 -5.2485 27 1 2.3915 0.9763 -5.1563 28 1 2.3204 -1.5938 -3.5440 29 1 0.9603 -0.5421 -4.0632 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075538950.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:37 Heat of formation + Delta-G solvation = 22.041459 kcal Electronic energy + Delta-G solvation = -10919.200516 eV Core-core repulsion = 9035.656007 eV Total energy + Delta-G solvation = -1883.544509 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.55969 -35.21681 -32.10954 -29.45765 -28.57405 -25.47186 -24.83854 -20.54206 -20.27411 -18.06379 -16.73595 -15.64933 -15.36273 -14.71864 -13.55522 -13.34646 -12.65861 -12.31898 -12.05679 -11.81098 -11.60135 -11.20389 -11.05660 -10.89753 -10.85591 -10.24119 -10.08310 -9.47334 -9.09317 -8.63669 -8.53103 -7.39566 -6.02056 -3.99062 2.66595 3.26682 3.36989 3.39572 4.42462 4.94063 4.98132 5.08261 5.28282 5.43306 5.65651 5.82166 5.92603 5.95047 6.18112 6.20370 6.28521 6.36339 6.40412 6.53672 6.79338 6.87874 7.14482 7.28188 7.75371 7.96556 8.37873 8.73186 9.09698 9.60900 11.11644 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.066455 B = 0.011026 C = 0.010829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.233912 B = 2538.868991 C = 2584.978010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.181 3.819 3 H 0.034 0.966 4 C -0.497 4.497 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.902 5.902 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.664 5.664 13 C 0.098 3.902 14 H 0.048 0.952 15 C -0.117 4.117 16 C -0.197 4.197 17 C -0.092 4.092 18 C -0.128 4.128 19 H 0.025 0.975 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.263 0.737 23 H 0.332 0.668 24 H 0.122 0.878 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 3.419 -12.885 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.072 3.928 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.541 5.541 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.293 5.293 13 C -0.012 4.012 14 H 0.066 0.934 15 C -0.136 4.136 16 C -0.216 4.216 17 C -0.129 4.129 18 C -0.166 4.166 19 H 0.044 0.956 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.150 0.850 24 H 0.140 0.860 25 H 0.136 0.864 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.754 3.488 -12.512 13.011 hybrid contribution -1.578 0.988 0.155 1.868 sum -2.332 4.476 -12.358 13.348 Atomic orbital electron populations 1.22863 1.01612 1.00865 0.98798 1.19697 0.88437 0.95161 0.89548 0.94851 1.20999 1.31059 1.13701 0.87758 0.90055 1.24945 0.96026 0.96603 0.95893 1.69887 1.45991 1.40414 0.97810 0.86898 0.80580 0.84020 0.76839 1.20804 1.22437 1.19522 1.60711 1.57791 1.08399 1.02438 1.21429 0.94705 0.94253 0.90816 0.93435 1.23353 0.96402 0.96829 0.96990 1.23060 0.99425 1.03705 0.95422 1.21220 0.96114 0.98206 0.97388 1.22698 0.99024 0.99951 0.94941 0.95585 0.92706 0.93680 0.92732 0.84962 0.85959 0.86407 0.91773 0.91519 0.90266 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.99 8.63 37.15 0.32 -3.67 15 2 C 0.18 4.33 2.02 -68.87 -0.14 4.19 15 3 H 0.03 0.84 6.88 -51.93 -0.36 0.48 15 4 C -0.50 -14.24 9.42 -34.44 -0.32 -14.56 15 5 H 0.08 2.57 8.06 -52.49 -0.42 2.14 15 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 15 7 N -0.90 -28.01 13.96 55.43 0.77 -27.23 15 8 Si 0.89 22.24 24.37 -169.99 -4.14 18.10 15 9 H -0.28 -6.86 6.87 56.52 0.39 -6.47 15 10 H -0.30 -7.46 7.11 56.52 0.40 -7.06 15 11 H -0.27 -6.53 6.53 56.52 0.37 -6.16 15 12 N -0.66 -13.79 6.05 -101.06 -0.61 -14.41 15 13 C 0.10 1.72 2.99 -67.81 -0.20 1.52 15 14 H 0.05 0.86 7.20 -51.93 -0.37 0.48 15 15 C -0.12 -2.01 10.34 -35.70 -0.37 -2.38 15 16 C -0.20 -2.84 10.77 -35.70 -0.38 -3.22 15 17 C -0.09 -1.16 6.81 -26.82 -0.18 -1.35 15 18 C -0.13 -1.80 6.60 -25.01 -0.17 -1.97 15 19 H 0.03 0.49 7.49 -51.93 -0.39 0.10 15 20 H 0.05 1.15 8.13 -51.93 -0.42 0.73 15 21 H 0.04 1.04 3.27 -51.93 -0.17 0.87 15 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 23 H 0.33 6.45 8.11 -39.29 -0.32 6.13 15 24 H 0.12 2.22 8.06 -52.48 -0.42 1.80 15 25 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 28 H 0.08 1.12 8.04 -51.93 -0.42 0.71 15 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 233.94 15.07 3.53 3.53 Total: -1.00 -30.31 233.94 -6.17 -36.48 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.17 Total: 3.13 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -1.54 Total: -19.60 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.16 Total: -41.64 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.31 -6.17 -36.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538950.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.518 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds