Wall clock time and date at job start Mon Mar 30 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47425 * 2 1 4 4 C 1.50702 * 109.47498 * 120.00182 * 2 1 3 5 5 H 1.08002 * 120.00001 * 119.99882 * 4 2 1 6 6 C 1.37875 * 119.99743 * 299.99996 * 4 2 1 7 7 N 1.31514 * 119.99754 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00054 * 359.97438 * 6 4 2 9 9 H 1.48510 * 109.46873 * 90.00369 * 8 6 4 10 10 H 1.48501 * 109.47427 * 209.99973 * 8 6 4 11 11 H 1.48500 * 109.47546 * 330.00191 * 8 6 4 12 12 N 1.46904 * 109.46977 * 240.00118 * 2 1 3 13 13 C 1.46906 * 111.00071 * 84.99811 * 12 2 1 14 14 H 1.09005 * 110.34127 * 327.28993 * 13 12 2 15 15 C 1.51099 * 110.38764 * 89.69579 * 13 12 2 16 16 C 1.30524 * 111.10451 * 135.24923 * 15 13 12 17 17 C 1.51101 * 111.10408 * 0.02562 * 16 15 13 18 18 C 1.54625 * 110.38691 * 205.00160 * 13 12 2 19 19 H 1.08992 * 109.47608 * 59.99723 * 1 2 3 20 20 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47280 * 299.99380 * 1 2 3 22 22 H 0.97000 * 120.00059 * 180.02562 * 7 6 4 23 23 H 1.00897 * 111.00222 * 321.04642 * 12 2 1 24 24 H 1.08010 * 124.44740 * 315.25090 * 15 13 12 25 25 H 1.08000 * 124.44698 * 180.02562 * 16 15 13 26 26 H 1.08998 * 110.38652 * 224.75395 * 17 16 15 27 27 H 1.09000 * 110.48334 * 102.42317 * 17 16 15 28 28 H 1.08998 * 111.03968 * 334.58211 * 18 13 12 29 29 H 1.09002 * 111.04153 * 98.52128 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5564 8 14 0.6259 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9772 1.9953 3.9070 11 1 0.8490 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2226 -2.3470 14 1 1.2868 0.9651 -2.2834 15 6 3.4325 0.8982 -2.4083 16 6 3.9009 0.9026 -3.6266 17 6 2.9410 0.2312 -4.5810 18 6 1.9774 -0.5672 -3.6722 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 1.9036 -0.5279 4.4375 23 1 1.4495 -1.4979 -1.4101 24 1 3.9429 1.3218 -1.5559 25 1 4.8500 1.3299 -3.9146 26 1 3.4782 -0.4425 -5.2485 27 1 2.3915 0.9763 -5.1563 28 1 2.3204 -1.5938 -3.5440 29 1 0.9603 -0.5421 -4.0632 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075538950.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:37 Heat of formation + Delta-G solvation = 0.481184 kcal Electronic energy + Delta-G solvation = -10920.135439 eV Core-core repulsion = 9035.656007 eV Total energy + Delta-G solvation = -1884.479432 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.86002 -36.92954 -34.21149 -31.12453 -29.73939 -27.20268 -26.57315 -22.23557 -21.67897 -19.32573 -18.79045 -17.15632 -16.86208 -16.39779 -15.36933 -14.85772 -14.43420 -14.16975 -13.63937 -13.37377 -12.83232 -12.74133 -12.65021 -12.20122 -12.08093 -11.99098 -11.85067 -11.42816 -11.12808 -10.76617 -9.82234 -9.01612 -8.28310 -6.30620 1.27285 1.33592 1.43620 1.44508 2.30797 3.05651 3.60214 3.75931 3.88626 4.25898 4.45520 4.48846 4.57480 4.62355 4.64370 4.76351 4.97636 4.99364 5.06902 5.20282 5.33538 5.38908 5.66532 5.68745 6.02572 6.08630 6.70483 6.75458 6.81253 7.34625 8.89367 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.066455 B = 0.011026 C = 0.010829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.233912 B = 2538.868991 C = 2584.978010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.187 3.813 3 H 0.023 0.977 4 C -0.504 4.504 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.953 3.047 9 H -0.264 1.264 10 H -0.297 1.297 11 H -0.254 1.254 12 N -0.678 5.678 13 C 0.095 3.905 14 H 0.045 0.955 15 C -0.168 4.168 16 C -0.166 4.166 17 C -0.090 4.090 18 C -0.122 4.122 19 H 0.059 0.941 20 H 0.057 0.943 21 H 0.035 0.965 22 H 0.265 0.735 23 H 0.338 0.662 24 H 0.098 0.902 25 H 0.139 0.861 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 4.609 -15.361 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.077 3.923 3 H 0.040 0.960 4 C -0.543 4.543 5 H 0.052 0.948 6 C -0.189 4.189 7 N -0.593 5.593 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.225 1.225 11 H -0.178 1.178 12 N -0.309 5.309 13 C -0.014 4.014 14 H 0.062 0.938 15 C -0.187 4.187 16 C -0.185 4.185 17 C -0.127 4.127 18 C -0.160 4.160 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.157 0.843 24 H 0.116 0.884 25 H 0.156 0.844 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.924 4.673 -15.023 15.851 hybrid contribution -1.086 0.544 0.844 1.479 sum -3.010 5.217 -14.180 15.406 Atomic orbital electron populations 1.22714 0.99369 1.01530 0.99897 1.19422 0.90007 0.93877 0.88959 0.95954 1.21296 1.30233 1.12492 0.90294 0.94789 1.25823 0.97614 1.00073 0.95348 1.70049 1.48008 1.42665 0.98533 0.85795 0.79156 0.79895 0.77112 1.19021 1.22519 1.17815 1.60553 1.57977 1.09333 1.02998 1.21555 0.94801 0.94010 0.91051 0.93766 1.23272 0.97472 1.00255 0.97704 1.23449 0.99737 1.00642 0.94636 1.21307 0.95613 0.98793 0.97001 1.22700 1.00869 0.99338 0.93095 0.92242 0.92371 0.94601 0.92572 0.84342 0.88426 0.84356 0.89590 0.89212 0.90677 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.33 8.63 71.98 0.62 -6.71 15 2 C 0.19 8.93 2.02 44.17 0.09 9.02 15 3 H 0.02 1.12 6.88 -2.39 -0.02 1.11 15 4 C -0.50 -29.83 9.42 25.60 0.24 -29.59 15 5 H 0.03 2.26 8.06 -2.91 -0.02 2.24 15 6 C 0.01 0.47 5.45 84.65 0.46 0.94 15 7 N -0.95 -60.97 13.96 21.45 0.30 -60.67 15 8 Si 0.95 45.92 24.37 68.60 1.67 47.59 15 9 H -0.26 -11.97 6.87 99.48 0.68 -11.29 15 10 H -0.30 -14.26 7.11 99.48 0.71 -13.55 15 11 H -0.25 -11.47 6.53 99.48 0.65 -10.82 15 12 N -0.68 -28.07 6.05 -473.63 -2.86 -30.93 15 13 C 0.10 3.19 2.99 44.85 0.13 3.33 15 14 H 0.04 1.50 7.20 -2.38 -0.02 1.48 15 15 C -0.17 -5.65 10.34 26.26 0.27 -5.38 15 16 C -0.17 -4.31 10.77 26.26 0.28 -4.03 15 17 C -0.09 -1.89 6.81 30.54 0.21 -1.69 15 18 C -0.12 -3.04 6.60 31.71 0.21 -2.83 15 19 H 0.06 2.06 7.49 -2.39 -0.02 2.05 15 20 H 0.06 2.34 8.13 -2.39 -0.02 2.33 15 21 H 0.04 1.55 3.27 -2.39 -0.01 1.54 15 22 H 0.27 15.87 8.31 -92.71 -0.77 15.10 15 23 H 0.34 12.95 8.11 -89.70 -0.73 12.22 15 24 H 0.10 3.67 8.06 -2.91 -0.02 3.65 15 25 H 0.14 2.98 8.06 -2.91 -0.02 2.96 15 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 28 H 0.07 1.94 8.04 -2.39 -0.02 1.92 15 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 Total: -1.00 -67.13 233.94 1.94 -65.19 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.32 Total: 15.76 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 2.52 Total: -36.94 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -2.56 Total: -91.60 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -67.13 1.94 -65.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538950.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.669 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds