Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47423 * 2 1 4 4 C 1.50695 * 109.47709 * 239.99824 * 2 1 3 5 5 H 1.07998 * 120.00577 * 239.99991 * 4 2 1 6 6 C 1.37886 * 120.00039 * 59.99553 * 4 2 1 7 7 N 1.31517 * 119.99402 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00052 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47142 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46753 * 120.00171 * 8 6 4 11 11 H 1.48499 * 109.46785 * 240.00140 * 8 6 4 12 12 N 1.46903 * 109.47189 * 119.99362 * 2 1 3 13 13 C 1.46895 * 111.00231 * 275.00274 * 12 2 1 14 14 H 1.09002 * 110.34373 * 34.29902 * 13 12 2 15 15 C 1.51104 * 110.38946 * 272.00803 * 13 12 2 16 16 C 1.30525 * 111.10650 * 224.63719 * 15 13 12 17 17 C 1.51094 * 111.10287 * 0.02562 * 16 15 13 18 18 C 1.54637 * 110.38668 * 156.58585 * 13 12 2 19 19 H 1.09000 * 109.47257 * 299.99822 * 1 2 3 20 20 H 1.08994 * 109.46972 * 60.00603 * 1 2 3 21 21 H 1.08997 * 109.46665 * 180.02562 * 1 2 3 22 22 H 0.96998 * 119.99294 * 179.97438 * 7 6 4 23 23 H 1.00907 * 111.00015 * 151.04615 * 12 2 1 24 24 H 1.08006 * 124.44418 * 44.66533 * 15 13 12 25 25 H 1.07999 * 124.44678 * 179.97438 * 16 15 13 26 26 H 1.08999 * 110.38926 * 135.24917 * 17 16 15 27 27 H 1.09008 * 110.38956 * 257.50891 * 17 16 15 28 28 H 1.08997 * 111.03562 * 261.59094 * 18 13 12 29 29 H 1.09006 * 111.03454 * 25.52681 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 3.1468 -2.2869 -3.6036 10 1 1.1663 -1.5868 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2228 2.3469 14 1 1.2701 0.9479 2.2981 15 6 3.4174 0.9295 2.3842 16 6 3.9071 0.9457 3.5940 17 6 2.9806 0.2519 4.5651 18 6 2.0176 -0.5704 3.6727 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 0.7095 1.1616 -3.4844 23 1 2.9174 -1.1204 1.0289 24 1 3.9026 1.3646 1.5228 25 1 4.8510 1.3952 3.8650 26 1 3.5455 -0.4084 5.2232 27 1 2.4253 0.9851 5.1501 28 1 1.0066 -0.5694 4.0802 29 1 2.3823 -1.5888 3.5377 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075538960.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = 10.854507 kcal Electronic energy + Delta-G solvation = -10866.319736 eV Core-core repulsion = 8982.290124 eV Total energy + Delta-G solvation = -1884.029611 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.44249 -34.83404 -32.02666 -28.72345 -28.39703 -25.52043 -24.68471 -20.27290 -19.86293 -18.28089 -16.60551 -15.44023 -15.12625 -14.47603 -13.54838 -12.87768 -12.62934 -11.89417 -11.56173 -11.35129 -11.17991 -11.06289 -10.91143 -10.73977 -10.58395 -10.26576 -10.10853 -9.74142 -8.81466 -8.68169 -8.43659 -7.19541 -6.01051 -4.07188 2.62021 3.29549 3.37328 3.41848 4.41857 5.01320 5.10191 5.29247 5.37565 5.69997 5.74006 5.86663 6.04033 6.12925 6.30773 6.54626 6.66218 6.85418 6.91093 7.16679 7.19224 7.31318 7.56204 7.80892 7.93459 8.30111 8.44465 8.71692 9.04764 9.58765 11.05359 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.070392 B = 0.010084 C = 0.009651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.676087 B = 2775.900686 C = 2900.570606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.209 3.791 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.679 5.679 13 C 0.104 3.896 14 H 0.080 0.920 15 C -0.175 4.175 16 C -0.184 4.184 17 C -0.099 4.099 18 C -0.112 4.112 19 H 0.003 0.997 20 H 0.080 0.920 21 H 0.031 0.969 22 H 0.260 0.740 23 H 0.332 0.668 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -0.264 9.185 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.102 3.898 3 H 0.020 0.980 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.308 5.308 13 C -0.007 4.007 14 H 0.098 0.902 15 C -0.195 4.195 16 C -0.204 4.204 17 C -0.136 4.136 18 C -0.150 4.150 19 H 0.022 0.978 20 H 0.099 0.901 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.150 0.850 24 H 0.138 0.862 25 H 0.132 0.868 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.326 -0.416 9.183 9.482 hybrid contribution 1.146 0.268 -1.187 1.672 sum 3.472 -0.148 7.996 8.718 Atomic orbital electron populations 1.21723 0.97995 0.99311 0.99275 1.19124 0.92493 0.92500 0.85723 0.98047 1.21322 1.31267 1.12448 0.90518 0.92221 1.24930 0.95080 0.95011 0.99049 1.69915 1.36784 1.22951 1.23295 0.86472 0.78601 0.79622 0.82894 1.19759 1.20978 1.21134 1.60866 1.31900 1.32072 1.05989 1.21491 0.93720 0.93111 0.92364 0.90158 1.24259 0.98787 0.98824 0.97588 1.23128 0.99270 1.02450 0.95502 1.21389 0.96518 0.98202 0.97497 1.22548 0.98758 0.99260 0.94422 0.97767 0.90140 0.94994 0.93024 0.85017 0.86233 0.86766 0.91946 0.91395 0.91420 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.18 37.16 0.34 -2.84 15 2 C 0.21 5.40 2.45 -68.87 -0.17 5.23 15 3 H 0.00 0.05 7.77 -51.93 -0.40 -0.35 15 4 C -0.52 -14.39 8.59 -34.44 -0.30 -14.69 15 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 15 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 15 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 15 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 12 N -0.68 -14.92 6.10 -101.05 -0.62 -15.54 15 13 C 0.10 1.95 2.98 -67.81 -0.20 1.75 15 14 H 0.08 1.61 7.19 -51.93 -0.37 1.24 15 15 C -0.17 -3.05 9.99 -35.70 -0.36 -3.41 15 16 C -0.18 -2.72 10.78 -35.70 -0.38 -3.11 15 17 C -0.10 -1.32 6.82 -26.68 -0.18 -1.51 15 18 C -0.11 -1.73 6.91 -24.86 -0.17 -1.91 15 19 H 0.00 0.08 7.47 -51.93 -0.39 -0.31 15 20 H 0.08 2.22 6.07 -51.93 -0.32 1.90 15 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.26 7.12 8.31 -40.82 -0.34 6.79 15 23 H 0.33 7.23 7.96 -39.29 -0.31 6.92 15 24 H 0.12 2.19 8.06 -52.48 -0.42 1.77 15 25 H 0.11 1.46 8.06 -52.49 -0.42 1.04 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.07 0.84 8.14 -51.92 -0.42 0.41 15 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 29 H 0.07 1.16 8.09 -51.93 -0.42 0.74 15 LS Contribution 240.44 15.07 3.62 3.62 Total: -1.00 -28.41 240.44 -7.19 -35.59 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.28 Total: 3.87 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.52 Total: -18.87 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.01 Total: -40.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.41 -7.19 -35.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538960.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.446 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds