Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47423 * 2 1 4 4 C 1.50695 * 109.47709 * 239.99824 * 2 1 3 5 5 H 1.07998 * 120.00577 * 239.99991 * 4 2 1 6 6 C 1.37886 * 120.00039 * 59.99553 * 4 2 1 7 7 N 1.31517 * 119.99402 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00052 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47142 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46753 * 120.00171 * 8 6 4 11 11 H 1.48499 * 109.46785 * 240.00140 * 8 6 4 12 12 N 1.46903 * 109.47189 * 119.99362 * 2 1 3 13 13 C 1.46895 * 111.00231 * 275.00274 * 12 2 1 14 14 H 1.09002 * 110.34373 * 34.29902 * 13 12 2 15 15 C 1.51104 * 110.38946 * 272.00803 * 13 12 2 16 16 C 1.30525 * 111.10650 * 224.63719 * 15 13 12 17 17 C 1.51094 * 111.10287 * 0.02562 * 16 15 13 18 18 C 1.54637 * 110.38668 * 156.58585 * 13 12 2 19 19 H 1.09000 * 109.47257 * 299.99822 * 1 2 3 20 20 H 1.08994 * 109.46972 * 60.00603 * 1 2 3 21 21 H 1.08997 * 109.46665 * 180.02562 * 1 2 3 22 22 H 0.96998 * 119.99294 * 179.97438 * 7 6 4 23 23 H 1.00907 * 111.00015 * 151.04615 * 12 2 1 24 24 H 1.08006 * 124.44418 * 44.66533 * 15 13 12 25 25 H 1.07999 * 124.44678 * 179.97438 * 16 15 13 26 26 H 1.08999 * 110.38926 * 135.24917 * 17 16 15 27 27 H 1.09008 * 110.38956 * 257.50891 * 17 16 15 28 28 H 1.08997 * 111.03562 * 261.59094 * 18 13 12 29 29 H 1.09006 * 111.03454 * 25.52681 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 3.1468 -2.2869 -3.6036 10 1 1.1663 -1.5868 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2228 2.3469 14 1 1.2701 0.9479 2.2981 15 6 3.4174 0.9295 2.3842 16 6 3.9071 0.9457 3.5940 17 6 2.9806 0.2519 4.5651 18 6 2.0176 -0.5704 3.6727 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 0.7095 1.1616 -3.4844 23 1 2.9174 -1.1204 1.0289 24 1 3.9026 1.3646 1.5228 25 1 4.8510 1.3952 3.8650 26 1 3.5455 -0.4084 5.2232 27 1 2.4253 0.9851 5.1501 28 1 1.0066 -0.5694 4.0802 29 1 2.3823 -1.5888 3.5377 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075538960.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = -7.100792 kcal Electronic energy + Delta-G solvation = -10867.098336 eV Core-core repulsion = 8982.290124 eV Total energy + Delta-G solvation = -1884.808212 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.83869 -36.69941 -33.99774 -30.44784 -29.76034 -27.47393 -26.41042 -22.02273 -21.42758 -19.63711 -18.55463 -17.10825 -16.76672 -16.11828 -15.27580 -14.66424 -14.36322 -13.59439 -13.10717 -12.99055 -12.77606 -12.69078 -12.57372 -12.30291 -12.20785 -12.10340 -12.03623 -11.50589 -10.88271 -10.60446 -9.96415 -8.96842 -8.14521 -6.28936 1.34459 1.40458 1.41894 1.54252 2.40867 3.13894 3.62577 3.85160 3.97213 4.35400 4.47089 4.62582 4.77436 4.83547 4.93290 5.04370 5.06512 5.21342 5.28772 5.39457 5.50445 5.60874 5.67813 5.83989 5.97928 6.21292 6.49549 6.79030 7.01192 7.41758 8.91559 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.070392 B = 0.010084 C = 0.009651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.676087 B = 2775.900686 C = 2900.570606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.032 1.032 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.678 5.678 13 C 0.098 3.902 14 H 0.059 0.941 15 C -0.218 4.218 16 C -0.148 4.148 17 C -0.095 4.095 18 C -0.107 4.107 19 H 0.019 0.981 20 H 0.057 0.943 21 H 0.028 0.972 22 H 0.263 0.737 23 H 0.332 0.668 24 H 0.098 0.902 25 H 0.141 0.859 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 -0.965 10.479 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.015 1.015 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.306 5.306 13 C -0.012 4.012 14 H 0.077 0.923 15 C -0.238 4.238 16 C -0.166 4.166 17 C -0.132 4.132 18 C -0.145 4.145 19 H 0.038 0.962 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.149 0.851 24 H 0.116 0.884 25 H 0.159 0.841 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.193 -1.117 10.501 11.033 hybrid contribution 0.892 0.529 -1.497 1.821 sum 4.084 -0.588 9.005 9.905 Atomic orbital electron populations 1.21552 0.97900 0.98846 0.98890 1.18899 0.92535 0.90817 0.87088 1.01474 1.21636 1.31609 1.12646 0.91724 0.92386 1.25771 0.95150 0.95690 1.02136 1.70042 1.37574 1.24136 1.24117 0.85401 0.78134 0.78567 0.78881 1.19053 1.20457 1.20581 1.60818 1.31883 1.32580 1.05362 1.21600 0.94011 0.92968 0.92657 0.92314 1.23986 0.99053 1.02257 0.98500 1.23515 0.99508 0.99196 0.94411 1.21453 0.96004 0.98628 0.97079 1.22525 1.00225 0.99012 0.92706 0.96158 0.92468 0.95264 0.92832 0.85105 0.88354 0.84085 0.89132 0.89390 0.90407 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.92 9.18 71.98 0.66 -5.26 15 2 C 0.22 11.45 2.45 44.17 0.11 11.55 15 3 H -0.03 -1.90 7.77 -2.38 -0.02 -1.92 15 4 C -0.54 -30.49 8.59 25.60 0.22 -30.27 15 5 H 0.06 3.23 7.62 -2.91 -0.02 3.21 15 6 C 0.01 0.65 5.30 84.66 0.45 1.10 15 7 N -0.92 -54.17 11.32 21.45 0.24 -53.93 15 8 Si 0.96 44.23 29.54 68.60 2.03 46.26 15 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 12 N -0.68 -30.22 6.10 -473.63 -2.89 -33.10 15 13 C 0.10 3.68 2.98 44.86 0.13 3.81 15 14 H 0.06 2.41 7.19 -2.39 -0.02 2.39 15 15 C -0.22 -7.57 9.99 26.26 0.26 -7.31 15 16 C -0.15 -3.94 10.78 26.26 0.28 -3.65 15 17 C -0.09 -2.16 6.82 30.63 0.21 -1.95 15 18 C -0.11 -3.07 6.91 31.81 0.22 -2.86 15 19 H 0.02 0.94 7.47 -2.39 -0.02 0.92 15 20 H 0.06 3.24 6.07 -2.39 -0.01 3.22 15 21 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.26 14.58 8.31 -92.71 -0.77 13.81 15 23 H 0.33 14.66 7.96 -89.69 -0.71 13.95 15 24 H 0.10 3.77 8.06 -2.91 -0.02 3.75 15 25 H 0.14 3.04 8.06 -2.91 -0.02 3.01 15 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 15 27 H 0.09 1.77 8.14 -2.38 -0.02 1.75 15 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 29 H 0.07 2.13 8.09 -2.38 -0.02 2.11 15 Total: -1.00 -61.30 240.44 2.33 -58.97 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.40 Total: 16.64 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 2.55 Total: -34.84 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -2.65 Total: -87.03 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -61.30 2.33 -58.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538960.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.873 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds